Datasets







Dataset Description Species Tissue Tissue Class Condition GEO Accession Experiment Type Animal Timepoints Replicates Details Link
AGING EPIDERMAL ADULT CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, adult animals Mus musculus Epidermal Adult Skin Control-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL ADULT RESTRICTED-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, adult animals Mus musculus Epidermal Adult Skin Restricted-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL AGED AGED: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, aged animals Mus musculus Epidermal Aged Skin Aged GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL AGED YOUNG: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, aged animals Mus musculus Epidermal Aged Skin Young GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL NORMAL CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals Mus musculus Epidermal Normal Skin Control-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL NORMAL HIGH-FAT-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals Mus musculus Epidermal Normal Skin High-Fat-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL NORMAL ND-CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals Mus musculus Epidermal Normal Skin Nd-Control-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING EPIDERMAL NORMAL RESTRICTED-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals Mus musculus Epidermal Normal Skin Restricted-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING SATELLITE ADULT CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, adult animals Mus musculus Satellite Adult Skin Control-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 6 Link            
AGING SATELLITE ADULT RESTRICTED-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, adult animals Mus musculus Satellite Adult Skin Restricted-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 6 Link            
AGING SATELLITE AGED CONTROL-DIET: Aged stem cells undergo circadian reprogramming during ageing, satellite stem cells, aged animals Mus musculus Satellite Aged Skin Control-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING SATELLITE AGED RESTRICTED-DIET: Aged stem cells undergo circadian reprogramming during ageing, satellite stem cells, aged animals Mus musculus Satellite Aged Skin Restricted-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING SATELLITE NORMAL CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, control animals Mus musculus Satellite Normal Skin Control-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
AGING SATELLITE NORMAL HIGH-FAT-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, control animals Mus musculus Satellite Normal Skin High-Fat-Diet GSE84580 Diet, Control 12, 20, 16, 0, 4, 8 5 Link            
ARABIDOPSIS PLANT EDWARDS 2007 WT: Study the circadian expression of genes to model the Arabidopsis circadian clock Arabidopsis thaliana Plant Plant Wild-Type GSE5612 Control 26, 38, 58, 46, 54, 30, 42, 50, 34, 62, 74, 66, 70 2 Plants will be transferred to continuous wight light after entrainment to 12h:12h light dark cycles. Analysis done with 26k chips. Link            
BABOON ADRENAL CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Adrenal Cortex Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON ADRENAL MEDULLA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Adrenal Medulla Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON AMYGDALA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Amygdala Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON ANTRUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Antrum Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON AORTA ENDOTHELIUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Aorta Endothelium Heart Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON ARCUATE NUCLEUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Arcuate Nucleus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON ASCENDING COLON MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Ascending Colon Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON AXILLARY LYMPHONODES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Axillary Lymphonodes Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON BLADDER MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Bladder Bladder Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON BONE MARROW MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Bone Marrow Bone Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON CECUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Cecum Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON CEREBELLUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Cerebellum Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON CORNEA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Cornea Eye Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON DESCENDING COLON MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Descending Colon Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON DORSOMEDIAL HYPOTHALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Dorsomedial Hypothalamus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON DUODENUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Duodenum Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON HABENULA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Habenula Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON HEART MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Heart Heart Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON HIPPOCAMPUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Hippocampus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON ILEUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Ileum Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON IRIS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Iris Eye Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON KIDNEY CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Kidney Cortex Kidney Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON KIDNEY MEDULLA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Kidney Medulla Kidney Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON LATERAL GLOBUS PALLIDUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Lateral Globus Pallidus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON LATERAL HYPOTHALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Lateral Hypothalamus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON LIVER MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Liver Liver Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON LUNG MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Lung Lung Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON MAMMILARY BOBIES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Mammilary Bobies Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON MEDIAL GLOBUS PALLIDUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Medial Globus Pallidus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON MESENTERIC LYMPHONODES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Mesenteric Lymphonodes Bone Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON MUSCLE ABDOMINAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Muscle Abdominal Muscle Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON MUSCLE GASTROCNEMIAN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Muscle Gastrocnemian Muscle Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON OESOPHAGUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Oesophagus Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON OLFACTORY BULB MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Olfactory Bulb Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON OMENTAL FAT MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Omental Fat Adipose Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON OPTIC NERVE HEAD MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Optic Nerve Head Eye Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PANCREAS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Pancreas Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PARAVENTRICULAR NUCLEI MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Paraventricular Nuclei Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PINEAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Pineal Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PITUITARY MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Pituitary Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PONS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Pons Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PREFRONTAL CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Prefrontal Cortex Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PREOPTIC AREA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Preoptic Area Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PROSTATE MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Prostate Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON PUTAMEN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Putamen Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON RETINA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Retina Eye Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON RETINAL PIGMENT EPITHELIUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Retinal Pigment Epithelium Eye Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON SKIN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Skin Skin Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON SMOOTH MUSCLE MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Smooth Muscle Muscle Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON SPLEEN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Spleen Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON STOMACH FUNDUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Stomach Fundus Digestive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON SUBSTANTIA NIGRA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Substantia Nigra Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON SUPRACHIASMATIC NUCLEI MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Suprachiasmatic Nucleus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON SUPRAOPTIC NUCLEUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Supraoptic Nucleus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON TESTICLES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Testicles Reproductive Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON THALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Thalamus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON THYROID MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Thyroid Glands Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON VENTRO MEDIAL HYPOTHALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Ventro Medial Hypothalamus Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON VISUAL CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis Visual Cortex Brain Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON WHITE ADIPOSE MESENTERIC MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis White Adipose Mesenteric Adipose Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON WHITE ADIPOSE PERICARDIAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis White Adipose Pericardial Adipose Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON WHITE ADIPOSE PERIRENAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis White Adipose Perirenal Adipose Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON WHITE ADIPOSE RETROPERITONEAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis White Adipose Retroperitoneal Adipose Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
BABOON WHITE ADIPOSE SUBCUTANEOUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours. Papio anubis White Adipose Subcutaneous Adipose Wild-Type GSE98965 Control Young Male 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Animals housed individually in semi-natural condition under 12 hours light:12 hours dark. Tissue collected every 2 hours across the 24 hour day. Link            
EMBRYONIC HEART E10: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart Mus musculus Heart Heart E10 Control 24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8 2 Link            
EMBRYONIC HEART E17: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart Mus musculus Heart Heart E17 Control 24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8 2 Link            
EMBRYONIC HEART YOUNG: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart Mus musculus Heart Heart Young Control 24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8 2 Link            
HUMAN BREAST GUTIERREZ 2016 CANCER: Gene expression analysis of cancerous breast cell lines determine the degree to which the circadian clock is damaged. Homo sapiens Breast Cells Cancer GSE76370 Cancer MCF-7 24, 12, 20, 16, 28, 0, 4, 8 2 Serum shock to synchronize the circadian clocks and observe the time course of gene expression using cDNA microarrays Link            
HUMAN FIBROBLAST LIU 2017 MYOGENIC-REPROGRAMMING: Human Fibroblast Reprogrammed to Myogenic Lineage via MyoD1 Homo sapiens Fibroblast Cells Myogenic-Reprogramming GSE54652 Control Cornal Epithelial 24, 16, 32, 40, 0, 8 4 Global bifurcation event delineated the transition into a myogenic cell identity 32 hours after exogenous MYOD1 activation. Link            
HUMAN SERUM NA 2017 TBI-PATIENT-1: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-10: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-11: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-12: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-2: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-3: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-4: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-5: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-6: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-7: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-8: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN SERUM NA 2017 TBI-PATIENT-9: Patients with inconsistent chrono-types diagnosed with TBI Homo sapiens Serum Serum Traumatic Brain Injury Disease 10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8 2 Link            
HUMAN U2 OS HUGHES 2009 OSTEOSARCOMA: Comparison of oscillating transcription from mouse liver, NIH3T3, and U2OS cells showing 12-hour oscillatory transcripts. Homo sapiens U2 Os Cells Osteosarcoma GSE11923 Control 42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 2 U2OS cells were grown to confluence and schocked with 0.1 microM dexamethasone (Sigma). Link            
MONKEY ADRENAL GLAND LEMOS 2006 WT: Genome-wide expression profiling to determine whether the adrenal gland of rhesus monkeys shows temporal gene expression across a 24-h period. Rhesus macaques Adrenal Gland Glands Wild-Type GSE2703 Control 11, 15, 23, 19, 3, 7 2 Six female rhesus macaques were maintained under a 12-h light, 12-h dark photoperiod, lights on at 0700 h [ZT0]. Link            
MOSQUITO EMBRYO GOLTSEV 2009 DEVELOPMENT: Detailed temporal microarray assays of mosquito gene expression profiles revealed that the cuticular genes display biphasic expression during A. gambiae embryogenesi Anopheles gambiae Embryo Embryo Development GSE15001 Control 10, 13, 22, 16, 19, 37, 31, 28, 43, 40, 34, 46, 2, 4, 7, 6, 8, 25 2 Population was reared with a 12-h light/dark cycle. Adults were maintained on a 10 percent sucrose solution and females were blood-fed on anesthetized hamsters. Eggs sampled every 2 hours. Link            
MOSQUITO HEAD PTITSYN 2011 WT: Document circadian rhythms in multiple molecular pathways essential for growth, development, immune response, detoxification/pesticide resistance. Aedes aegypti Head Head Wild-Type Control 76, 88, 72, 80, 92, 84 2 Transcripts were collected from the heads of females that were 72, 76, 80, 84, 88, 92, 96, 100 and 104 hours old. Link            
MOSQUITO HEAD RUND 2011 DARK-DARK: DNA microarray analysis of An. gambiae under light/dark cycle (LD) and constant dark (DD) conditions. Anopheles gambiae Head Head Dark-Dark Control 24, 12, 20, 48, 16, 32, 44, 28, 36, 40, 0, 4, 8 2 Adult mated, non blood fed female mosquitoes were collected every 4 hours for 48 hours Link            
MOSQUITO LARVA KOUTSOS 2007 DEVELOPMENT: Genome-wide survey of mosquito gene expression profiles clustered temporally into developmental programs and spatially into adult tissue-specific patterns. Anopheles gambiae Larva Larva Development Control 144, 192, 240, 48, 96 2 Mosquito life cycle was sampled empirically at eight successive time periods: embryos, five larval stages, pupae, and adult females and males. Link            
MOSQUITO MID GUT MARINOTTI 2006 BLOOD-FED: Examining sex-differential changes in gene expression after blood meal. Anopheles gambiae Mid Gut Mid-Gut Blood-Fed Control 24, 3, 72, 48, 96 2 Sampling after blood meal 3 h, 24 h, 48 h, 72 h, 96 h Link            
MOSQUITO THORAX CHOI 2014 LIVERPOOL-INFECTED: Dual RNA-seq time course analysis of Brugia Malayi parasite and host mosquito. Aedes aegypti Thorax Thoracic Infected Control Liverpool, RED 24, 72, 48, 96 2 Thoracic tissues were collected every 24 hours from mosquitoes exposed to an infected or uninfected blood meal. Link            
MOSQUITO THORAX CHOI 2014 RED-INFECTED: Dual RNA-seq time course analysis of Brugia Malayi parasite and host mosquito. Aedes aegypti Thorax Thoracic Infected Control Liverpool, RED 24, 72, 48, 96 2 Thoracic tissues were collected every 24 hours from mosquitoes exposed to an infected or uninfected blood meal. Link            
MOUSE 3T3 HUGHES 2009 WT: Comparison of oscillating transcription from mouse liver, NIH3T3, and U2OS cells showing 12-hour oscillatory transcripts. Mus musculus 3t3 Cells Wild-Type GSE11923 Control 3T3 42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 2 NIH3T3 cells (ATCC) were grown to confluence and synchronized with 10 microM forskolin (Sigma). Link            
MOUSE ADRENAL GLAND NA 2018 WT: Mouse Adrenal Gland Transcriptome Mus musculus Adrenal Gland Glands Wild-Type Control 38, 58, 46, 54, 42, 50, 62, 74, 66, 70, 82, 78 3 Link            
MOUSE ADRENAL GLAND ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Adrenal Gland Glands Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE AORTA RUDIC 2005 WT: Bioinformatic Analysis of Circadian Gene Oscillation in Mouse Aorta Mus musculus Aorta Heart Wild-Type Control 26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54 3 Link            
MOUSE AORTA ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Aorta Heart Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE BRAIN STEM ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Brain Stem Brain Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE BREAST YANG 2017 WT: Cellular mechano-environment regulates the mammary circadian clock. Mus musculus Breast Breast Wild-Type Control 11, 39, 27, 15, 23, 19, 47, 31, 43, 35, 3, 7 2 Breast tissues were isolated at 4 hr intervals for two circadian (24 hourly) cycles, from mice kept under constant darkness to avoid any light- or dark-driven genes. Link            
MOUSE BROWN FAT ANTERIOR DORSUM ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Brown Fat Anterior Dorsum Adipose Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE CEREBELLUM ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Cerebellum Brain Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE CORTICAL COLLECTING DUCT ZUBER 2009 WT: Circadian rhythms in the distal nephron segments, i.e., distal convoluted tubule (DCT) and connecting tubule (CNT) and the cortical collecting duct (CCD) Mus musculus Cortical Collecting Duct Kidney Wild-Type Control 12, 20, 16, 0, 4, 8 3 Link            
MOUSE DISTAL COLON HOOGERWERF 2008 WT: Microarray transcriptional profiling of mRNA expression in the mouse distal colon. Mus musculus Distal Colon Digestive Wild-Type Control 12, 20, 16, 0, 4, 8 4 Link            
MOUSE DISTAL CONVOLUTED TUBULE ZUBER 2009 WT: Circadian rhythms in the distal nephron segments, i.e., distal convoluted tubule (DCT) and connecting tubule (CNT) and the cortical collecting duct (CCD) Mus musculus Distal Convoluted Tubule Kidney Wild-Type Control 12, 20, 16, 0, 4, 8 3 Link            
MOUSE EPIDIDYMAL ADIPOSE ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Epididymal Adipose Adipose Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE FIBROBLAST GRECO 2018 AHCY-KO: RNA-Seq Mouse Embryonic Fibroblast comparing Wild-Type to AHCY Knock-Out Mus musculus Fibroblast Cells Ahcy-KO Knock-Out 24, 12, 20, 16, 32, 28 4 Link            
MOUSE FIBROBLAST GRECO 2018 WT: RNA-Seq Mouse Embryonic Fibroblast comparing Wild-Type to AHCY Knock-Out Mus musculus Fibroblast Cells Wild-Type Control 24, 12, 20, 16, 32, 28 4 Link            
MOUSE HEART ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Heart Heart Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE HYPOTHALAMUS ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Hypothalamus Brain Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE INTESTINAL EPITHELIA TOGNINI 2017 KETOGENIC-DIET: Intestinal epithelia microarray in a ketogenic diet vs. normal chow experiment. Mus musculus Intestinal Epithelia Digestive Ketogenic-Diet Diet 8-week-old C57BL/6 12, 20, 16, 0, 4, 8 4 Submitted 8-week-old C57BL/6 mice to KD dietary regimen during 4 weeks and compared them to normal chow-fed mice. Link            
MOUSE INTESTINAL EPITHELIA TOGNINI 2017 NORMAL-CHOW: Intestinal epithelia microarray in a ketogenic diet vs. normal chow experiment. Mus musculus Intestinal Epithelia Digestive Normal-Chow Control 8-week-old C57BL/6 12, 20, 16, 0, 4, 8 4 Submitted 8-week-old C57BL/6 mice to KD dietary regimen during 4 weeks and compared them to normal chow-fed mice. Link            
MOUSE KIDNEY ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Kidney Kidney Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE LIVER ECKEL-MAHAN 2013 HIGH-FAT: Investigating widespread remodeling of the liver clock generated by high-fat diet. Mus musculus Liver Liver High-Fat GSE52333 Diet 8-week old, male C57BL/6J 12, 20, 16, 0, 4, 8 4 Animals consuming normal chow or high fat diet (60 percent kcal from fat) for ten weeks were analyzed for circadian gene expression. Livers were harvested from animals every four hours throughout the circadian cycle. Link            
MOUSE LIVER ECKEL-MAHAN 2013 NORMAL-CHOW: Investigating widespread remodeling of the liver clock generated by high-fat diet. Mus musculus Liver Liver Normal-Chow GSE52333 Control 8-week old, male C57BL/6J 12, 20, 16, 0, 4, 8 4 Animals consuming normal chow or high fat diet (60 percent kcal from fat) for ten weeks were analyzed for circadian gene expression. Livers were harvested from animals every four hours throughout the circadian cycle. Link            
MOUSE LIVER GAUCHER 2018 ACUTE-ETOH: Liver RNASeq acutely treated with ethanol Mus musculus Liver Liver Acute-Etoh Drug Treatment 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER GAUCHER 2018 CHRONIC-ETOH: Liver RNASeq chronically treated with ethanol Mus musculus Liver Liver Chronic-Etoh Drug Treatment 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER GAUCHER 2018 WT: Liver RNASeq acutely treated with ethanol Mus musculus Liver Liver Wild-Type Control 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER GAUCHER 2018 WT: Liver RNASeq acutely treated with ethanol Mus musculus Liver Liver Wild-Type Control 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER HUGHES 2009 WT: Circadian microarray of mouse liver over a 48 hour time course Mus musculus Liver Liver Wild-Type Control 42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 2 Link            
MOUSE LIVER KINOUCHI 2018 FASTING: Liver RNASeq in a fasting condition Mus musculus Liver Liver Fasting Diet 12, 20, 16, 0, 4, 8 7 Link            
MOUSE LIVER KINOUCHI 2018 NORMAL-CHOW: Liver RNASeq in a fasting condition Mus musculus Liver Liver Normal-Chow Control 12, 20, 16, 0, 4, 8 7 Link            
MOUSE LIVER MASRI 2014 SIRT1-KO: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism. Mus musculus Liver Liver Sirt1-KO GSE57830 Knock-Out 12, 20, 16, 0, 4, 8 4 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Link            
MOUSE LIVER MASRI 2014 SIRT1-WT: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism. Mus musculus Liver Liver Sirt1-Wild-Type GSE57830 Control 12, 20, 16, 0, 4, 8 4 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Link            
MOUSE LIVER MASRI 2014 SIRT6-KO: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism. Mus musculus Liver Liver Sirt6-KO GSE54652 Knock-Out 12, 20, 16, 0, 4, 8 4 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Link            
MOUSE LIVER MASRI 2014 SIRT6-WT: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism. Mus musculus Liver Liver Sirt6-Wild-Type GSE54652 Control 12, 20, 16, 0, 4, 8 4 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Link            
MOUSE LIVER MASRI 2016 LUNG-WT: Lung adenocarcinoma operates as an endogenous reorganizer of circadian metabolism. Mus musculus Liver Liver Lung-Wild-Type Control KrasLSL, C57BL/6J 12, 20, 16, 0, 4, 8 4 WT and TB mice were sacrificed every four hours over the circadian cycle and livers were subjected to transcriptomics and metabolomics analyses. Link            
MOUSE LIVER MASRI 2016 TUMOR-BEARING-LUNG: Lung adenocarcinoma operates as an endogenous reorganizer of circadian metabolism. Mus musculus Liver Liver Tumor-Bearing-Lung Cancer KrasLSL, C57BL/6J 12, 20, 16, 0, 4, 8 4 WT and TB mice were sacrificed every four hours over the circadian cycle and livers were subjected to transcriptomics and metabolomics analyses. Link            
MOUSE LIVER MILLER 2007 WT: Mouse Wild Type Liver Transcriptome Mus musculus Liver Liver Wild-Type Control 26, 38, 58, 22, 46, 54, 30, 42, 50, 34, 62 3 Link            
MOUSE LIVER NAN 2018 LIBRAMED-TREATMENT: Liver RNASeq in an experiment treated with the drug Libramed Mus musculus Liver Liver Libramed-Treatment Drug Treatment 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER NAN 2018 WT: Liver RNASeq in an experiment treated with the drug Libramed Mus musculus Liver Liver Wild-Type Control 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER PANDA 2002 WT: Gene expression profiling to identify cycling transcripts in the SCN and in the liver Mus musculus Liver Liver Wild-Type Control 38, 58, 46, 54, 30, 42, 50, 34, 62, 74, 66, 70 3 Link            
MOUSE LIVER SASSONE ILLUMINA KO: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock Mus musculus Liver Sassone Illumina Liver KO Knock-Out 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER SASSONE ILLUMINA RE: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock Mus musculus Liver Sassone Illumina Liver Re Knock-Out 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER SASSONE ILLUMINA WT: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock Mus musculus Liver Sassone Illumina Liver Wild-Type Control 12, 20, 16, 0, 4, 8 4 Link            
MOUSE LIVER TERAJIMA 2017 ADARB1-KO: Identification A-to-I RNA editing as a key mechanism of post-transcriptional regulation in the circadian clockwork. Mus musculus Liver Liver Adarb1-KO Knock-Out 10, 14, 22, 18, 2, 6 4 Link            
MOUSE LIVER TERAJIMA 2017 WT: Identification A-to-I RNA editing as a key mechanism of post-transcriptional regulation in the circadian clockwork. Mus musculus Liver Liver Wild-Type Control 10, 14, 22, 18, 2, 6 4 Link            
MOUSE LIVER TOGNINI 2017 KETOGENIC-DIET: Liver microarray in a ketogenic diet vs. normal chow experiment. Mus musculus Liver Liver Ketogenic-Diet Diet 8-week-old C57BL/6 12, 20, 16, 0, 4, 8 4 Submitted 8-week-old C57BL/6 mice to KD dietary regimen during 4 weeks and compared them to normal chow-fed mice. Link            
MOUSE LIVER TOGNINI 2017 NORMAL-CHOW: Liver microarray in a ketogenic diet vs. normal chow experiment. Mus musculus Liver Liver Normal-Chow Control 8-week-old C57BL/6 12, 20, 16, 0, 4, 8 4 Submitted 8-week-old C57BL/6 mice to KD dietary regimen during 4 weeks and compared them to normal chow-fed mice. Link            
MOUSE LIVER ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Liver Liver Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE LUNG ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Lung Lung Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE MACROPHAGES KELLER 2009 DARK: Macrophages in all dark. Mus musculus Macrophages Cells Dark Control 24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8 2 Link            
MOUSE MUSCLE ANDREWS 2010 WT: Skeletal muscle with Bmal1(-/-) condition Mus musculus Muscle Muscle Wild-Type Control 26, 38, 58, 22, 46, 54, 30, 42, 50, 34, 62 3 Link            
MOUSE MUSCLE GASTROCNEMIUS ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Muscle Gastrocnemius Muscle Wild-Type GSE54652 Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 week, then released into constant darkness. Link            
MOUSE MUSCLE KINOUCHI 2018 FASTING: Muscle RNASeq in a fasting condition Mus musculus Muscle Muscle Fasting Diet 12, 20, 16, 0, 4, 8 7 Link            
MOUSE MUSCLE KINOUCHI 2018 NORMAL-CHOW: Muscle RNASeq in a fasting condition Mus musculus Muscle Muscle Normal-Chow Control 12, 20, 16, 0, 4, 8 7 Link            
MOUSE PITUITARY ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project. Mus musculus Pituitary Glands Wild-Type GSE54652 Control C57/BL6 42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 2 6-wk-old male C57/BL6 mice entrained to a 12h:12h light:dark schedule for 1 wk, then released into constant darkness. Link            
MOUSE SCN DZNEP: RNASeq of SCN in a DZnep treatment experiment Mus musculus Scn Brain Dznep Control 9, 3, 15, 21 5 Link            
MOUSE SCN SALINE WT: RNASeq of SCN in a saline treatment experiment Mus musculus Scn Saline Brain Wild-Type Control 9, 3, 15, 21 5 Link            
MOUSE SKELETAL MUSCLE NA 2018 SIRT1-KO: Skeletal muscle RNASeq in a Sirt1KO experiment via a cre-lox system Mus musculus Skeletal Muscle Muscle Sirt1-KO Knock-Out 19, 25, 13, 7 5 Link            
MOUSE SKELETAL MUSCLE NA 2018 WT: Skeletal muscle RNASeq in a Sirt1KO experiment via a cre-lox system Mus musculus Skeletal Muscle Muscle Wild-Type Control 19, 25, 13, 7 5 Link            
MOUSE SUPRACHIASMATIC NUCLEUS BALLANCE 2015 WT: Circadian RNA expression profile of the mammalian biological clock, the suprachiasmatic nucleus (SCN) in C57/BL6 mice, at 2-hour resolution using microarrays. Mus musculus Suprachiasmatic Nucleus Brain Wild-Type Control C57/BL6 56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18 2 24 samples total covering 24 time points, with no replicates. SCN samples from mouse brains collected every 2 hours for 2 days Link            
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 COCAINE: RNASeq of SCN in a cocaine treatment experiment with D2R Knock-Out Mus musculus Suprachiasmatic Nucleus Brain Cocaine Drug Treatment 11, 15, 23, 19, 3, 7 4 Link            
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 COCAINE-D2R-KO: RNASeq of SCN in a cocaine treatment experiment with D2R Knock-Out Mus musculus Suprachiasmatic Nucleus Brain Cocaine-D2R-KO Drug Treatment 11, 15, 23, 19, 3, 7 4 Link            
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 D2R-KO: RNASeq of SCN in a cocaine treatment experiment with D2R Knock-Out Mus musculus Suprachiasmatic Nucleus Brain D2R-KO Drug Treatment 11, 15, 23, 19, 3, 7 4 Link            
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 WT: RNASeq of SCN in a cocaine treatment experiment with D2R Knock-Out Mus musculus Suprachiasmatic Nucleus Brain Wild-Type Control 11, 15, 23, 19, 3, 7 4 Link            
MOUSE SUPRACHIASMATIC NUCLEUS PANDA 2002 WT: Gene expression profiling to identify cycling transcripts in the SCN and in the liver Mus musculus Suprachiasmatic Nucleus Brain Wild-Type Control C57BL/6J 26, 38, 58, 22, 18, 30, 42, 50, 34, 62, 54 3 Entrained C57BL/6J mice to a 12-hour light, 12-hour dark cycle (LD12:12) under constant temperature for two weeks, and then transferred the mice to constant darkness. Link            
MOUSE TRANSCRIPTOME EVENING-EXERCISE: Transcriptomic data for mouse exercise in light dark conditions. Mus musculus Transcriptome Liver Evening-Exercise Exercise 24, 12, 20, 16, 4, 8 7 Link            
MOUSE TRANSCRIPTOME EVENING-SEDENTARY: Transcriptomic data for mouse exercise in light dark conditions. Mus musculus Transcriptome Liver Evening-Sedentary Exercise 24, 12, 20, 16, 4, 8 7 Link            
MOUSE TRANSCRIPTOME MORNING-EXERCISE: Transcriptomic data for mouse exercise in light dark conditions. Mus musculus Transcriptome Liver Morning-Exercise Exercise 24, 12, 20, 16, 4, 8 7 Link            
MOUSE TRANSCRIPTOME MORNING-SEDENTARY: Transcriptomic data for mouse exercise in light dark conditions. Mus musculus Transcriptome Liver Morning-Sedentary Exercise 24, 12, 20, 16, 4, 8 7 Link            
MOUSE VENTRAL HIPPOCAMPUS KONRAD 2017 TEMPORAL-LOBE-EPILEPTIC: Hippocampus RNASeq in an experiment comparing epileptic vs normal brain. Mus musculus Ventral Hippocampus Brain Temporal-Lobe-Epileptic GSE54652 Disease 11, 15, 23, 19, 3, 7 5 Link            
MOUSE VENTRAL HIPPOCAMPUS KONRAD 2017 WT: Hippocampus RNASeq in an experiment comparing epileptic vs normal brain. Mus musculus Ventral Hippocampus Brain Wild-Type GSE54652 Control 11, 15, 23, 19, 3, 7 5 Link            
RAT LIVER ALMON 2008 WT: Global gene expression analysis in the identification of circadian-regulated genes involved in drug action. Rattus norvegicus Liver Liver Wild-Type GSE8988 Control Male Winstar 11, 10, 13, 12, 20, 14, 22, 16, 24, 18, 23, 1, 2, 4, 6, 8 7 Twenty-seven rats were acclimatized for 2 weeks prior to study to a normal light/dark cycle. Link            
Dataset Description Species Tissue Tissue Class Condition GEO Accession Experiment Type Animal Timepoints Replicates Details Link
HUMAN U2 OS KRISHNAIAH 2017 OSTEOSARCOMA: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism. Homo sapiens U2 Os Cells Osteosarcoma Control 42, 24, 26, 20, 22, 46, 44, 48, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32 3 Sampled U2 OS cells every 2 hr for 48 hr. Link            
MOUSE BROWN ADIPOSE DYAR 2018 HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum. Mus musculus Brown Adipose Adipose High-Fat Control 24, 12, 20, 16, 0, 4, 8 6 Link            
MOUSE BROWN ADIPOSE DYAR 2018 NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum. Mus musculus Brown Adipose Adipose Normal-Chow Control 24, 12, 20, 16, 0, 4, 8 6 Link            
MOUSE EXERCISE METABOLOME EVENING-EXERCISE: Metabolomic data for mouse exercise Mus musculus Exercise Metabolome Liver Evening-Exercise Knock-Out 24, 12, 20, 16, 4, 8 7 Link            
MOUSE EXERCISE METABOLOME EVENING-SEDENTARY: Metabolomic data for mouse exercise Mus musculus Exercise Metabolome Liver Evening-Sedentary Knock-Out 24, 12, 20, 16, 4, 8 7 Link            
MOUSE EXERCISE METABOLOME MORNING-EXERCISE: Metabolomic data for mouse exercise Mus musculus Exercise Metabolome Liver Morning-Exercise Knock-Out 24, 12, 20, 16, 4, 8 7 Link            
MOUSE EXERCISE METABOLOME MORNING-SEDENTARY: Metabolomic data for mouse exercise Mus musculus Exercise Metabolome Liver Morning-Sedentary Knock-Out 24, 12, 20, 16, 4, 8 7 Link            
MOUSE HEPATOCYTE KRISHNAIAH 2017 WT: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism. Mus musculus Hepatocyte Liver Wild-Type Control 24, 12, 20, 16, 0, 4, 8 13 Due to known dampening of molecular clock in sampling was done every 4 hours over 24 hours Link            
MOUSE LIVER ECKEL-MAHAN 2011 CLOCK-KO: Liver metabolome of a Clock-KO experiment Mus musculus Liver Liver Clock-KO Knock-Out 9, 3, 15, 21 6 Link            
MOUSE LIVER ECKEL-MAHAN 2011 WT: Liver metabolome of a Clock-KO experiment Mus musculus Liver Liver Wild-Type Control 9, 3, 15, 21 6 Link            
MOUSE LIVER KRISHNAIAH 2017 BMAL1-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism. Mus musculus Liver Liver Bmal1-Kd Knock-Down 42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 5 Sampled mouse in replicate every 1 hr for 48 hr in DD Link            
MOUSE LIVER KRISHNAIAH 2017 CRY1-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism. Mus musculus Liver Liver Cry1-Kd Knock-Down 42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 5 Sampled mouse in replicate every 1 hr for 48 hr in DD Link            
MOUSE LIVER KRISHNAIAH 2017 CRY2-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism. Mus musculus Liver Liver Cry2-Kd Knock-Down 42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 5 Sampled mouse in replicate every 1 hr for 48 hr in DD Link            
MOUSE LIVER KRISHNAIAH 2017 WT: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism. Mus musculus Liver Liver Wild-Type Control 42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32 5 Sampled mouse in replicate every 1 hr for 48 hr in DD Link            
MOUSE LIVER METABOLOME ECKEL-MAHAN 2013 HIGH-FAT: Investigating widespread remodeling of the liver clock generated by high-fat diet. Mus musculus Liver Metabolome Liver High-Fat GSE52333 Diet 8-week old, male C57BL/6J 24, 12, 20, 16, 0, 4, 8 6 Animals consuming normal chow or high fat diet (60 percent kcal from fat) for ten weeks were analyzed for circadian gene expression. Livers were harvested from animals every four hours throughout the circadian cycle. Link            
MOUSE LIVER METABOLOME ECKEL-MAHAN 2013 NORMAL-CHOW: Investigating widespread remodeling of the liver clock generated by high-fat diet. Mus musculus Liver Metabolome Liver Normal-Chow GSE52333 Control 8-week old, male C57BL/6J 24, 12, 20, 16, 0, 4, 8 6 Animals consuming normal chow or high fat diet (60 percent kcal from fat) for ten weeks were analyzed for circadian gene expression. Livers were harvested from animals every four hours throughout the circadian cycle. Link            
MOUSE LIVER METABOLOME MASRI 2014 SIRT1-KO: Liver metabolome of a Sirt1 KO experiment. Mus musculus Liver Metabolome Liver Sirt1-KO GSE57830 Knock-Out 12, 20, 16, 0, 4, 8 6 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Livers were harvested every 4 hr over the circadian cycle Link            
MOUSE LIVER METABOLOME MASRI 2014 SIRT1-WT: Liver metabolome of a Sirt1 KO experiment. Mus musculus Liver Metabolome Liver Sirt1-Wild-Type GSE57830 Control 12, 20, 16, 0, 4, 8 6 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Livers were harvested every 4 hr over the circadian cycle Link            
MOUSE LIVER METABOLOME MASRI 2014 SIRT6-KO: Metabolome of a liver in a Sirt6 KO experiment Mus musculus Liver Metabolome Liver Sirt6-KO GSE57830 Knock-Out 12, 20, 16, 0, 4, 8 6 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Livers were harvested every 4 hr over the circadian cycle Link            
MOUSE LIVER METABOLOME MASRI 2014 SIRT6-WT: Metabolome of a liver in a Sirt6 KO experiment Mus musculus Liver Metabolome Liver Sirt6-Wild-Type GSE57830 Control 12, 20, 16, 0, 4, 8 6 Mice with liver-specific ablation of either Sirt1 or Sirt6 genes and their corresponding wild-type (WT) littermates. Livers were harvested every 4 hr over the circadian cycle Link            
MOUSE LIVER METABOLOME MASRI 2016 LUNG-WT: Liver metabolome of a mouse with a distal tumor bearing lung as an experimental condition Mus musculus Liver Metabolome Liver Lung-Wild-Type GSE73222 Control Kras, C57BL/6J 12, 20, 16, 0, 4, 8 6 WT and TB mice were sacrificed every 4 hr over the circadian cycle (zeitgeber time [ZT] 0, 4, 8, 12, 16 and 20) and livers were subjected to transcriptomics and metabolomics analyses Link            
MOUSE LIVER METABOLOME MASRI 2016 TUMOR-BEARING-LUNG: Liver metabolome of a mouse with a distal tumor bearing lung as an experimental condition Mus musculus Liver Metabolome Liver Tumor-Bearing-Lung GSE73222 Cancer Kras, C57BL/6J 12, 20, 16, 0, 4, 8 6 WT and TB mice were sacrificed every 4 hr over the circadian cycle (zeitgeber time [ZT] 0, 4, 8, 12, 16 and 20) and livers were subjected to transcriptomics and metabolomics analyses Link            
MOUSE LIVER SASSONE METABOLOME KO: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock Mus musculus Liver Sassone Metabolome Liver KO Knock-Out 12, 20, 16, 0, 4, 8 5 Link            
MOUSE LIVER SASSONE METABOLOME RE: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock Mus musculus Liver Sassone Metabolome Liver Re Knock-Out 12, 20, 16, 0, 4, 8 5 Link            
MOUSE LIVER SASSONE METABOLOME WT: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock Mus musculus Liver Sassone Metabolome Liver Wild-Type Control 12, 20, 16, 0, 4, 8 5 Link            
MOUSE MUSCLE DYAR 2018 HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and seru. Mus musculus Muscle Muscle High-Fat Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE MUSCLE DYAR 2018 NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and seru. Mus musculus Muscle Muscle Normal-Chow Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE MUSCLE NA 2018 KO: Mouse with Knock-Out condition Mus musculus Muscle Muscle KO Knock-Out 12, 20, 16, 0, 4, 8 6 Link            
MOUSE MUSCLE NA 2018 WT: Mouse with Knock-Out condition Mus musculus Muscle Muscle Wild-Type Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE PREFRONTAL CORTEX NA 2018 HIGH-FAT: Mus musculus Prefrontal Cortex Brain High-Fat Diet 12, 20, 16, 0, 4, 8 6 Link            
MOUSE PREFRONTAL CORTEX NA 2018 NORMAL-CHOW: Mus musculus Prefrontal Cortex Brain Normal-Chow Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE SERUM ABBONDANTE 2016 HIGH-FAT: Comparative circadian metabolomic analysis on serum and liver in mice under high fat diet. Mus musculus Serum Serum High-Fat Diet C57BL/6J 24, 12, 20, 16, 0, 4, 8 6 Age-matched, male C57BL/6J mice (JAX, 00064) were maintained on a 12-h light/12-h dark cycle. At 6 weeks of age, animals were placed on a normal chow diet (Prolab RMH 2500) or an HFD (60 percent of calories from fat; Research Diets, D12492) for 10 weeks. Liver and serum were harvested across the circadian cycle every 4 h. Serum was prepared from an abdominal/thoracic blood sample. Link            
MOUSE SERUM ABBONDANTE 2016 WT: Comparative circadian metabolomic analysis on serum and liver in mice under high fat diet. Mus musculus Serum Serum Wild-Type Control C57BL/6J 24, 12, 20, 16, 0, 4, 8 6 Age-matched, male C57BL/6J mice (JAX, 00064) were maintained on a 12-h light/12-h dark cycle. At 6 weeks of age, animals were placed on a normal chow diet (Prolab RMH 2500) or an HFD (60 percent of calories from fat; Research Diets, D12492) for 10 weeks. Liver and serum were harvested across the circadian cycle every 4 h. Serum was prepared from an abdominal/thoracic blood sample. Link            
MOUSE SPERM DYAR 2018 HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum. Mus musculus Sperm Reproductive High-Fat Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE SPERM DYAR 2018 NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum. Mus musculus Sperm Reproductive Normal-Chow Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 HIGH-FAT: Mus musculus Suprachiasmatic Nucleus Brain High-Fat Diet 12, 20, 16, 0, 4, 8 6 Link            
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 NORMAL-CHOW: Mus musculus Suprachiasmatic Nucleus Brain Normal-Chow Control 12, 20, 16, 0, 4, 8 6 Link            
MOUSE WHITE ADIPOSE DYAR 2018 HIGH-FAT: Mus musculus White Adipose Adipose High-Fat Control 24, 12, 20, 16, 0, 4, 8 6 Link            
MOUSE WHITE ADIPOSE DYAR 2018 NORMAL-CHOW: Mus musculus White Adipose Adipose Normal-Chow Control 24, 12, 20, 16, 0, 4, 8 6 Link            
Dataset Description Species Tissue Tissue Class Condition GEO Accession Experiment Type Animal Timepoints Replicates Details Link
MOUSE LIVER MASRI 2013 CLOCK-KO: Liver acetylome in a high fat diet experiment Mus musculus Liver Liver Clock-KO Knock-Out Age-matched Adult Male 9, 3, 15, 21 4 MS-based approach to analyze lysine acetylation sites in mouse liver in WT and Clock KO littermates. Mice were killed at ZT 3, 9, 15, and 21, and three independent livers from each ZT were used for acetylome analysis Link            
MOUSE LIVER MASRI 2013 WT: Liver acetylome in a high fat diet experiment Mus musculus Liver Liver Wild-Type Control Age-matched Adult Male 9, 3, 15, 21 4 MS-based approach to analyze lysine acetylation sites in mouse liver in WT and Clock KO littermates. Mice were killed at ZT 3, 9, 15, and 21, and three independent livers from each ZT were used for acetylome analysis Link            
MOUSE LIVER MAUVOISIN 2017 BMAL-KO: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins. Mus musculus Liver Liver Bmal-KO Knock-Out C57BL/6 0, 12, 18, 6 2 Optimized sample preparation including antibody-based enrichment protocols combined with sensitive nano-reverse-phase liquid chromatography (RP-LC) tandem MS (MS/MS) applied to total (TE) and nuclear (NE) mouse liver protein extracts harvested during two diurnal cycles Link            
MOUSE LIVER MAUVOISIN 2017 BMAL-KO-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins. Mus musculus Liver Liver Bmal-KO-Nuclear Knock-Out C57BL/6 0, 12, 18, 6 2 Optimized sample preparation including antibody-based enrichment protocols combined with sensitive nano-reverse-phase liquid chromatography (RP-LC) tandem MS (MS/MS) applied to total (TE) and nuclear (NE) mouse liver protein extracts harvested during two diurnal cycles Link            
MOUSE LIVER MAUVOISIN 2017 CRY-KO: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins. Mus musculus Liver Liver Cry-KO Knock-Out C57BL/6 0, 12, 18, 6 2 Optimized sample preparation including antibody-based enrichment protocols combined with sensitive nano-reverse-phase liquid chromatography (RP-LC) tandem MS (MS/MS) applied to total (TE) and nuclear (NE) mouse liver protein extracts harvested during two diurnal cycles Link            
MOUSE LIVER MAUVOISIN 2017 CRY-KO-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins. Mus musculus Liver Liver Cry-KO-Nuclear Knock-Out C57BL/6 0, 12, 18, 6 2 Optimized sample preparation including antibody-based enrichment protocols combined with sensitive nano-reverse-phase liquid chromatography (RP-LC) tandem MS (MS/MS) applied to total (TE) and nuclear (NE) mouse liver protein extracts harvested during two diurnal cycles Link            
MOUSE LIVER MAUVOISIN 2017 WT: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins. Mus musculus Liver Liver Wild-Type Control C57BL/6 0, 12, 18, 6 2 Optimized sample preparation including antibody-based enrichment protocols combined with sensitive nano-reverse-phase liquid chromatography (RP-LC) tandem MS (MS/MS) applied to total (TE) and nuclear (NE) mouse liver protein extracts harvested during two diurnal cycles Link            
MOUSE LIVER MAUVOISIN 2017 WT-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins. Mus musculus Liver Liver Wild-Type-Nuclear Control C57BL/6 0, 12, 18, 6 2 Optimized sample preparation including antibody-based enrichment protocols combined with sensitive nano-reverse-phase liquid chromatography (RP-LC) tandem MS (MS/MS) applied to total (TE) and nuclear (NE) mouse liver protein extracts harvested during two diurnal cycles Link            
Dataset Description Species Tissue Tissue Class Condition GEO Accession Experiment Type Animal Timepoints Replicates Details Link
MOUSE CEREBRAL CORTEX GERSTNER 2016 WT: Comprehensive analysis of the effects of sleep deprivation and subsequent recovery sleep on gene expression in the mouse cortex. Mus musculus Cerebral Cortex Brain Wild-Type GSE78215 Control 11, 0, 8, 7, 6 8 Subjected mice to 5 to 6 h of sleep deprivation and different amounts of recovery sleep were sacrificed at matching circadian times. Link            
MOUSE LIVER NA 2018 WT: Proteome of mouse liver. Mus musculus Liver Liver Wild-Type Control 12, 20, 16, 0, 4, 8 3 Link            
MOUSE LIVER ROBLES 2014 WT: Proteome of mouse liver. Mus musculus Liver Liver Wild-Type Control 24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45 4 Link            
MOUSE LIVER ROBLES 2014 WT: Proteome of mouse liver. Mus musculus Liver Liver Wild-Type Control 24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45 4 Link            
MOUSE SUPRACHIASMATIC NUCLEUS MENDOZA 2017 MIR132-KO: SCN neurons from miR-132/212-deficient mice. Mus musculus Suprachiasmatic Nucleus Brain Mir132-KO Control C57BL/6J 9, 3, 12, 21 5 Male and female mice, aged 4 to 8 weeks, were killed by cervical dislocation and decapitation under white light or dim red light as appropriate. Coronal sections were obtained with a vibratome or brain matrix. Link            
MOUSE SUPRACHIASMATIC NUCLEUS MENDOZA 2017 WT: SCN neurons from miR-132/212-deficient mice. Mus musculus Suprachiasmatic Nucleus Brain Wild-Type Control C57BL/6J 9, 3, 12, 21 5 Male and female mice, aged 4 to 8 weeks, were killed by cervical dislocation and decapitation under white light or dim red light as appropriate. Coronal sections were obtained with a vibratome or brain matrix. Link            
MOUSE VENTRAL HIPPOCAMPUS PROTEOME KONRAD 2017 TEMPORAL-LOBE-EPILEPTIC: Mus musculus Ventral Hippocampus Proteome Brain Temporal-Lobe-Epileptic Disease Age Matched Adult 11, 15, 23, 19, 3, 7 2 Link            
MOUSE VENTRAL HIPPOCAMPUS PROTEOME KONRAD 2017 WT: Mus musculus Ventral Hippocampus Proteome Brain Wild-Type Control Age Matched Adult 11, 15, 23, 19, 3, 7 2 Link