Single-Cell

Datasets:

Dataset Description Species Tissue Timepoints Study
Fly Clock Constant Darkness: Single-cell RNA-seq of Drosophila clock neurons under constant darkness, characterizing free-running circadian rhythms across cell types. Drosophila melanogaster Brain 2, 6, 10, 14, 18, 22 Publication
Fly Clock Dopamine: Single-cell RNA-seq of Drosophila clock and dopaminergic neurons profiling dopaminergic signaling across the circadian cycle. Drosophila melanogaster Brain 2, 6, 10, 14, 18, 22 Publication
Fly Clock GPCR: Single-cell RNA-seq of Drosophila clock neurons enriched for GPCR signaling, comparing day and night transcriptional states. Drosophila melanogaster Brain 2, 14 Publication
Fly Clock Light-Dark: Single-cell RNA-seq of Drosophila clock neurons under light-dark cycles, characterizing entrained circadian rhythms across cell types. Drosophila melanogaster Brain 2, 6, 10, 14, 18, 22 Publication
Fly DN3 Clock Neurons: Single-cell RNA-seq of Drosophila DN3 clock neurons profiled across the circadian cycle. Drosophila melanogaster Brain 2, 6, 10, 14, 18, 22 Publication
Human Heart ACR: Single-nucleus RNA-seq of human heart left ventricle from donors with abnormal circadian rhythm (ACR). Homo sapiens Heart (Left Ventricle) 8, 16 Publication
Human Heart NCR: Single-nucleus RNA-seq of human heart left ventricle from donors with normal circadian rhythm (NCR). Homo sapiens Heart (Left Ventricle) 8, 16 Publication
Mouse Aorta: Single-cell RNA-seq of male mouse aorta sampled across the light-dark cycle to characterize vascular cell rhythms. Mus musculus Aorta 0, 6, 12, 18 Publication
Mouse Liver Clock: Single-cell RNA-seq of mouse hepatocytes profiling rhythmic gene expression across the 24-hour circadian cycle. Mus musculus Liver 0, 6, 12, 18 Publication
Mouse Liver Multiome: Single-nucleus multiome (RNA + ATAC) of mouse liver profiling chromatin accessibility and gene expression across the circadian cycle. Mus musculus Liver 2, 6, 10, 14, 18, 22 Publication
Mouse Muscle: Single-cell RNA-seq of mouse skeletal muscle profiling cell type dynamics during circadian-regulated regeneration. Mus musculus Skeletal Muscle 4, 16, 28, 40, 76, 88 Publication
Mouse PVN: Single-nucleus RNA-seq of mouse hypothalamic paraventricular nucleus comparing day and night transcriptional states. Mus musculus Hypothalamus (PVN) 8, 20 Publication
Mouse SCN: Single-cell RNA-seq of mouse suprachiasmatic nucleus to characterize cellular heterogeneity of the central circadian pacemaker. Mus musculus Suprachiasmatic Nucleus 14, 18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58 Publication
Mouse Skin: Single-cell RNA-seq of mouse dorsal dermis profiling skin cell type rhythms across the circadian cycle. Mus musculus Dorsal Dermis 2, 6, 10, 14, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62, 66, 70 Publication
Mouse Tongue: Single-cell RNA-seq of mouse tongue taste epithelium comparing day and night transcriptional states. Mus musculus Tongue Epithelium 0, 12 Publication

Interactive Gene Expression Analysis

 Normalization: