Datasets

Dataset Description	Species	Tissue	Condition	Experiment Type	Timepoints	Study
AGE DEPENDENT CIRCADIAN CHANGES ADRENAL AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age groups	Mus musculus	Adrenal Gland	Aged	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES ADRENAL OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age groups	Mus musculus	Adrenal Gland	Old	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES ADRENAL YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age groups	Mus musculus	Adrenal Gland	Young	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES HEART AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Heart	Aged	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES HEART OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Heart	Old	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES HEART YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Heart	Young	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES HYPOTHALAMUS AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Hypothalamus	Aged	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES HYPOTHALAMUS OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Hypothalamus	Old	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES HYPOTHALAMUS YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Hypothalamus	Young	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES KIDNEY AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Kidney	Aged	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES KIDNEY OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Kidney	Old	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES KIDNEY YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Kidney	Young	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES LUNG AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Lung	Aged	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES LUNG OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Lung	Old	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES LUNG YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Lung	Young	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES MUSCLE AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Skeletal Muscle	Aged	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES MUSCLE OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Skeletal Muscle	Old	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGE DEPENDENT CIRCADIAN CHANGES MUSCLE YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Skeletal Muscle	Young	Age	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
AGING EPIDERMAL STEM CELLS ADULT CONTROL-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS ADULT RESTRICTED-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Caloric Restriction	Diet	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS AGED: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Aged	Age	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS CONTROL-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS HIGH-FAT-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS ND-CONTROL-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS RESTRICTED-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Caloric Restriction	Diet	0, 4, 8, 12, 16, 20	Publication
AGING EPIDERMAL STEM CELLS YOUNG: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Epidermis	Young	Age	0, 4, 8, 12, 16, 20	Publication
AGING SATELLITE CELLS ADULT CONTROL-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Skeletal Muscle	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
AGING SATELLITE CELLS ADULT RESTRICTED-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Skeletal Muscle	Caloric Restriction	Diet	0, 4, 8, 12, 16, 20	Publication
AGING SATELLITE CELLS AGED CONTROL-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Skeletal Muscle	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
AGING SATELLITE CELLS AGED RESTRICTED-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Skeletal Muscle	Caloric Restriction	Diet	0, 4, 8, 12, 16, 20	Publication
AGING SATELLITE CELLS CONTROL-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Skeletal Muscle	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
AGING SATELLITE CELLS HIGH-FAT-DIET: Effects of aging, diet, and circadian clock disruption on daily rhythmic gene expression in mouse epidermal and skeletal muscle stem cells.	Mus musculus	Skeletal Muscle	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	Publication
ARABIDOPSIS EDWARDS 2007 PLANT WT: Study the circadian expression of genes to model the Arabidopsis circadian clock	Arabidopsis thaliana	Whole Seedling	Control	Control	26, 30, 34, 38, 42, 46, 50, 54, 58, 62, 66, 70, 74	Publication
ARABIDOPSIS EXTENDED PHOTOPERIOD FLOWERING CONTROL: RNA-seq of Arabidopsis recombinant inbred lines to assess circadian and photoperiod responses linked to flowering timing.	Arabidopsis thaliana	Whole Seedling	Control	Light-Dark	1, 2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 61, 62, 63, 64, 65, 66, 68, 69, 71, 73, 74, 76, 77, 78	Publication
ARABIDOPSIS EXTENDED PHOTOPERIOD FLOWERING EXTENDED-LIGHT: RNA-seq of Arabidopsis recombinant inbred lines to assess circadian and photoperiod responses linked to flowering timing.	Arabidopsis thaliana	Whole Seedling	Extended Light	Light-Dark	1, 2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 38, 39, 40, 41, 42, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 61, 62, 63, 64, 65, 66, 68, 69, 71, 73, 74, 76, 77, 78	Publication
BABOON MURE 2018 ADRENAL CORTEX WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adrenal Cortex	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 ADRENAL MEDULLA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adrenal Medulla	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 AMYGDALA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Amygdala	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 ANTRUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Antrum	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 AORTA ENDOTHELIUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Aorta	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 ARCUATE NUCLEUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Arcuate Nucleus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 ASCENDING COLON WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Ascending Colon	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 AXILLARY LYMPHONODES WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Axillary Lymph Nodes	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 BLADDER WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Bladder	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 BONE MARROW WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Bone Marrow	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 CECUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Cecum	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 CORNEA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Cornea	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 DESCENDING COLON WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Descending Colon	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 DORSOMEDIAL HYPOTHALAMUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Dorsomedial Hypothalamus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 DUODENUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Duodenum	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 HABENULA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Habenula	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 HEART WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Heart	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 HIPPOCAMPUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Hippocampus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 ILEUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Ileum	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 IRIS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Iris	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20	Publication
BABOON MURE 2018 KIDNEY CORTEX WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Kidney Cortex	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 KIDNEY MEDULLA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Kidney Medulla	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 LATERAL GLOBUS PALLIDUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Lateral Globus Pallidus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 LATERAL HYPOTHALAMUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Lateral Hypothalamus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 LIVER WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Liver	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 LUNG WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Lung	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 MAMMILARY BODIES WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Mammillary Body	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 MEDIAL GLOBUS PALLIDUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Medial Globus Pallidus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 MESENTERIC LYMPHONODES WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Mesenteric Lymph Nodes	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 MUSCLE ABDOMINAL WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Muscle Abdominal	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 MUSCLE GASTROCNEMIAN WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Gastrocnemius	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 OESOPHAGUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Oesophagus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 OLFACTORY BULB WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Olfactory Bulb	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 OMENTAL FAT WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Omental Fat	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 OPTIC NERVE HEAD WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Optic Nerve Head	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PANCREAS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Pancreas	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PARAVENTRICULAR NUCLEUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Paraventricular Nucleus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PINEAL WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Pineal Gland	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PITUITARY WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Pituitary	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PONS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Pons	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PREFRONTAL CORTEX WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Prefrontal Cortex	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PREOPTIC AREA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Preoptic Area	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PROSTATE WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Prostate	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 PUTAMEN WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Putamen	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 RETINA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Retina	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 RETINAL PIGMENT EPITHELIUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Retinal Pigment Epithelium	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 SKIN WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Skin	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 SMOOTH MUSCLE WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Smooth Muscle	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 SPLEEN WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Spleen	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 STOMACH FUNDUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Stomach Fundus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 SUBSTANTIA NIGRA WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Substantia Nigra	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 SUPRACHIASMATIC NUCLEUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Suprachiasmatic Nucleus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 SUPRAOPTIC NUCLEUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Supraoptic Nucleus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 TESTICLES WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Testis	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 THALAMUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Thalamus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 THYROID WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Thyroid	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 VENTRO MEDIAL HYPOTHALAMUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Ventromedial Hypothalamus	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 VISUAL CORTEX WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Visual Cortex	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 WHITE ADIPOSE MESENTERIC WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Mesenteric White Adipose Tissue	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 WHITE ADIPOSE PERICARDIAL WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	White Adipose Tissue	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 WHITE ADIPOSE PERIRENAL WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	White Adipose Tissue	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 WHITE ADIPOSE RETROPERITONEAL WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	White Adipose Tissue	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOON MURE 2018 WHITE ADIPOSE SUBCUTANEOUS WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	White Adipose Tissue	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
BABOONMURE 2018 CEREBELLUM WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Cerebellum	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
C. ELEGANS 2024 NHR-23 KO: C. elegans were cultivated under temperature cycles. Then, depleted NHR-23, and sampled worms under constant(CC) condition every 2 h.	Caenorhabditis elegans	Whole Body	Nuclear Receptor Knockout	Knockout	1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23	Publication
C.ELEGANS DEVELOPMENT ON FOOD WT: Synchronized L1 stage larvae were placed on food at 25C, and samples collected hourly over a 16 hr period that covered development from L3 to the young adult stage.	Caenorhabditis elegans	Whole Body	Control	Control	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16	Publication
CANCER FOXP1 MUSCLE CACHEXIA KPC-FOXP1-KO: Circadian analysis of muscle from pancreatic-cancer cachectic mice (KPC) and non-tumor controls (Sham), with and without muscle-specific FoxP1 knockout.	Mus musculus	Tibialis Anterior	Pancreatic Cancer, Transcription Factor Knockout	Cancer, Knockout	18, 22, 26, 30, 34, 38	Publication
CANCER FOXP1 MUSCLE CACHEXIA KPC-WT: Circadian analysis of muscle from pancreatic-cancer cachectic mice (KPC) and non-tumor controls (Sham), with and without muscle-specific FoxP1 knockout.	Mus musculus	Tibialis Anterior	Pancreatic Cancer	Cancer, Knockout	18, 22, 26, 30, 34, 38	Publication
CANCER FOXP1 MUSCLE CACHEXIA SHAM-FOXP1-KO: Circadian analysis of muscle from pancreatic-cancer cachectic mice (KPC) and non-tumor controls (Sham), with and without muscle-specific FoxP1 knockout.	Mus musculus	Tibialis Anterior	Transcription Factor Knockout	Cancer, Knockout	18, 22, 26, 30, 34, 38	Publication
CANCER FOXP1 MUSCLE CACHEXIA SHAM-WT: Circadian analysis of muscle from pancreatic-cancer cachectic mice (KPC) and non-tumor controls (Sham), with and without muscle-specific FoxP1 knockout.	Mus musculus	Tibialis Anterior	Control	Cancer, Knockout	18, 22, 26, 30, 34, 38	Publication
CDKL5 IMPACT IN HIPPOCAMPUS KO: Gene expression profiling of the hippocampus in wild-type and Cdkl5 knockout mice to assess the transcriptional effects of Cdkl5 deficiency in a region central to learning and memory.	Mus musculus	Hippocampus	Neurodevelopmental Signaling Knockout	Knockout	0, 4, 8, 12, 16, 20	None
CDKL5 IMPACT IN HIPPOCAMPUS WT: Gene expression profiling of the hippocampus in wild-type and Cdkl5 knockout mice to assess the transcriptional effects of Cdkl5 deficiency in a region central to learning and memory.	Mus musculus	Hippocampus	Control	Knockout	0, 4, 8, 12, 16, 20	None
CDKL5 IMPACT IN SCN KO: Gene expression profiling of the suprachiasmatic nucleus (SCN) in wild-type and Cdkl5 knockout mice to determine how Cdkl5 loss alters circadian regulation in the central clock.	Mus musculus	Suprachiasmatic Nucleus	Neurodevelopmental Signaling Knockout	Knockout	0, 4, 8, 12, 16, 20	None
CDKL5 IMPACT IN SCN WT: Gene expression profiling of the suprachiasmatic nucleus (SCN) in wild-type and Cdkl5 knockout mice to determine how Cdkl5 loss alters circadian regulation in the central clock.	Mus musculus	Suprachiasmatic Nucleus	Control	Knockout	0, 4, 8, 12, 16, 20	None
CHICKEN ERYTHROID PROGENITORS DAMIOLA 2004 WT: Global gene expression profile of immature avian erythrocytic progenitor cells, comparing self-renewal vs differentiation states (SAGE analysis) to identify factors involved in the switch from progenitor self-renewal to differentiation.	Gallus gallus	Erythroid Progenitors Cells	Control	Control	12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72	Publication
CIRCADIAN VS SLEEP-WAKE CORTEX SLEEP-DEPRIVED: Cortical gene expression rhythms under total sleep deprivation vs normal sleep.	Mus musculus	Cortex	Sleep Deprivation	Sleep	27, 30, 36, 42, 48, 54, 60, 66, 72, 78, 192, 198	Publication
CIRCADIAN VS SLEEP-WAKE CORTEX WT: Cortical gene expression rhythms under total sleep deprivation vs normal sleep.	Mus musculus	Cortex	Control	Sleep	27, 30, 36, 42, 48, 54, 60, 66, 72, 78, 192, 198	Publication
CIRCADIAN VS SLEEP-WAKE LIVER SLEEP-DEPRIVED: Liver gene expression rhythms with sleep deprivation vs normal sleep.	Mus musculus	Liver	Sleep Deprivation	Sleep	27, 30, 36, 42, 48, 54, 60, 66, 72, 78, 192, 198	Publication
CIRCADIAN VS SLEEP-WAKE LIVER WT: Liver gene expression rhythms with sleep deprivation vs normal sleep.	Mus musculus	Liver	Control	Sleep	27, 30, 36, 42, 48, 54, 60, 66, 72, 78, 192, 198	Publication
DROSOPHILA DPPIL4 CIRCADIAN KD: Circadian transcriptome profiling of Drosophila clock cells following Drosophila Peptidyl-Prolyl cis/trans Isomerase-like 4 (dPPIL4) knockdown (KD) versus Wild-Type.	Drosophila melanogaster	Head	Knockdown	Genetic Perturbation	8, 16	Publication
DROSOPHILA DPPIL4 CIRCADIAN WT: Circadian transcriptome profiling of Drosophila clock cells following Drosophila Peptidyl-Prolyl cis/trans Isomerase-like 4 (dPPIL4) knockdown (KD) versus Wild-Type.	Drosophila melanogaster	Head	Control	Genetic Perturbation	8, 16	Publication
DROSOPHILA KADENER 2015 CABUT OVEREXPRESSION: Circadian RNA-seq profiling of Drosophila heads under light-dark conditions after cabut overexpression or RNAi-mediated cabut knockdown.	Drosophila melanogaster	Head	Overexpression	Genetic Perturbation	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA KADENER 2015 CABUT OVEREXPRESSION CONTROL: Circadian RNA-seq profiling of Drosophila heads under light-dark conditions after cabut overexpression or RNAi-mediated cabut knockdown.	Drosophila melanogaster	Head	Overexpression	Genetic Perturbation	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA KADENER 2015 CABUT RNAI: Circadian RNA-seq profiling of Drosophila heads under light-dark conditions after cabut overexpression or RNAi-mediated cabut knockdown.	Drosophila melanogaster	Head	Knockdown	Genetic Perturbation	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA KADENER 2015 CABUT RNAI-CONTROL: Circadian RNA-seq profiling of Drosophila heads under light-dark conditions after cabut overexpression or RNAi-mediated cabut knockdown.	Drosophila melanogaster	Head	Knockdown	Genetic Perturbation	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA KADENER 2019 TEMPERATURE 18C: RNA seq from fly heads at 3 temperatures (18, 25, 29C) and circadian timepoints (zt3, zt7, zt11, zt15, zt18, zt23)	Drosophila melanogaster	Head	18C	Temperature	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA KADENER 2019 TEMPERATURE 25C: RNA seq from fly heads at 3 temperatures (18, 25, 29C) and circadian timepoints (zt3, zt7, zt11, zt15, zt18, zt23)	Drosophila melanogaster	Head	25C	Temperature	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA KADENER 2019 TEMPERATURE 29C: RNA seq from fly heads at 3 temperatures (18, 25, 29C) and circadian timepoints (zt3, zt7, zt11, zt15, zt18, zt23)	Drosophila melanogaster	Head	29C	Temperature	3, 7, 11, 15, 19, 23	Publication
DROSOPHILA TIM PROMOTER/ENHANCER 10 BP UPSTREAM DELETION: Effects of upstream and intronic regulatory element deletions in the Drosophila timeless gene on circadian gene expression.	Drosophila melanogaster	Head	Deletion	Genetic Perturbation	2, 6, 10, 14, 18, 22	Publication
DROSOPHILA TIM PROMOTER/ENHANCER 122 BP UPSTREAM DELETION: Effects of upstream and intronic regulatory element deletions in the Drosophila timeless gene on circadian gene expression.	Drosophila melanogaster	Head	Deletion	Genetic Perturbation	2, 6, 10, 14, 18, 22	Publication
DROSOPHILA TIM PROMOTER/ENHANCER 126 BP UPSTREAM DELETION: Effects of upstream and intronic regulatory element deletions in the Drosophila timeless gene on circadian gene expression.	Drosophila melanogaster	Head	Deletion	Genetic Perturbation	2, 6, 10, 14, 18, 22	Publication
DROSOPHILA TIM PROMOTER/ENHANCER 24 BP INTRONIC DELETION: Effects of upstream and intronic regulatory element deletions in the Drosophila timeless gene on circadian gene expression.	Drosophila melanogaster	Head	Deletion	Genetic Perturbation	2, 6, 10, 14, 18, 22	Publication
DROSOPHILA TIM PROMOTER/ENHANCER WT: Effects of upstream and intronic regulatory element deletions in the Drosophila timeless gene on circadian gene expression.	Drosophila melanogaster	Head	Control	Genetic Perturbation	2, 6, 10, 14, 18, 22	Publication
EMBRYONIC HEART E10: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart	Mus musculus	Heart	Early-Embryonic	Age	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
EMBRYONIC HEART E17: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart	Mus musculus	Heart	Late-Embryonic	Age	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
EMBRYONIC HEART YOUNG: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart	Mus musculus	Heart	Young	Age	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
ENERGY BALANCE DIURNAL NOCTURNAL ARCUATE NUCLEUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Arcuate Nucleus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL ARCUATE NUCLEUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Arcuate Nucleus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL BRAINSTEM HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brainstem	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL BRAINSTEM LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brainstem	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL BROWN ADIPOSE HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brown Adipose Tissue	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL BROWN ADIPOSE LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brown Adipose Tissue	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL CEREBELLUM HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Cerebellum	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL CEREBELLUM LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Cerebellum	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL CORTEX HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Cortex	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL CORTEX LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Cortex	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL DORSOMEDIAL HYPOTHALAMUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Dorsomedial Hypothalamus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL DORSOMEDIAL HYPOTHALAMUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Dorsomedial Hypothalamus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL HABENULA HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Habenula	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL HABENULA LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Habenula	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL HIPPOCAMPUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Hippocampus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL HIPPOCAMPUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Hippocampus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS CAUDAL HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Lateral Hypothalamus Caudal	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS CAUDAL LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Lateral Hypothalamus Caudal	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS ROSTRAL HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Lateral Hypothalamus Rostral	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS ROSTRAL LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Lateral Hypothalamus Rostral	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL LIVER HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Liver	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL LIVER LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Liver	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL OLFACTORY BULB HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Olfactory Bulb	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL OLFACTORY BULB LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Olfactory Bulb	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Paraventricular Nucleus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Paraventricular Nucleus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEUS THALAMUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Paraventricular Nucleus Thalamus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEUS THALAMUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Paraventricular Nucleus Thalamus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PERIVENTRICULAR ZONE HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Periventricular Zone	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PERIVENTRICULAR ZONE LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Periventricular Zone	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PREFRONTAL CORTEX HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Prefrontal Cortex	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PREFRONTAL CORTEX LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Prefrontal Cortex	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PREOPTIC AREA HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Preoptic Area	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL PREOPTIC AREA LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Preoptic Area	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL QUADRICEPS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Quadriceps	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL QUADRICEPS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Quadriceps	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL SUPRACHIASMATIC NUCLEUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Suprachiasmatic Nucleus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL SUPRACHIASMATIC NUCLEUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Suprachiasmatic Nucleus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL TESTIS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Testis	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL TESTIS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Testis	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL VENTROMEDIAL HYPOTHALAMUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Ventromedial Hypothalamus	High Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
ENERGY BALANCE DIURNAL NOCTURNAL VENTROMEDIAL HYPOTHALAMUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Ventromedial Hypothalamus	Low Exercise	Exercise	1, 5, 9, 13, 17, 21	Publication
GUT MICROBIOTA AFFECT IN DUODENUM GERM-FREE: Rolee of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Duodenum	Germ-Free	Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN DUODENUM WT: Rolee of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Duodenum	Control	Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN ILEUM GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Ileum	Germ-Free	Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN ILEUM WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Ileum	Control	Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN LIVER FEMALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Female, Germ-Free	Sex, Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN LIVER FEMALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Female, Control	Sex, Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN LIVER MALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Male, Germ-Free	Sex, Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN LIVER MALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Male, Control	Sex, Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN MALE CRY KO: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Core Clock Knockout	Knockout	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN WHITE ADIPOSE MALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	White Adipose Tissue	Germ-Free	Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT MICROBIOTA AFFECT IN WHITE ADIPOSE MALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	White Adipose Tissue	Control	Microbiome	2, 6, 10, 14, 18, 22	Publication
GUT TOMOKI 2021 KO: Circadian analysis of the digestive system under Wild-Type and knockout conditions	Mus musculus	Intestine	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
GUT TOMOKI 2021 RE RE: Circadian transcriptomic analysis of mouse intestine under wild-type, knockout, and rescue (re-expression) conditions.	Mus musculus	Intestine	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
GUT TOMOKI 2021 RE TOTAL-KO: Circadian transcriptomic analysis of mouse intestine under wild-type, knockout, and rescue (re-expression) conditions.	Mus musculus	Intestine	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
GUT TOMOKI 2021 RE WT: Circadian transcriptomic analysis of mouse intestine under wild-type, knockout, and rescue (re-expression) conditions.	Mus musculus	Intestine	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
GUT TOMOKI 2021 WT: Circadian analysis of the digestive system under Wild-Type and knockout conditions	Mus musculus	Intestine	Control	Knockout	0, 4, 8, 12, 16, 20	None
HUGHES 2009 HUMAN U2 OS OSTEOSARCOMA: Comparison of oscillating transcription from mouse liver, NIH3T3, and U2OS cells showing 12-hour oscillatory transcripts.	Homo sapiens	Cells	Control	Control	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48	Publication
HUGHES 2009 MOUSE 3T3 WT: Comparison of oscillating transcription from mouse liver, NIH3T3, and U2OS cells showing 12-hour oscillatory transcripts.	Mus musculus	Cells	Control	Control	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48	Publication
HUGHES 2009 MOUSE LIVER WT: Circadian microarray of mouse liver over a 48 hour time course	Mus musculus	Liver	Control	Control	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48	Publication
HUMAN FIBROBLAST CANCER VS NORMAL CANCER: Circadian transcriptome of human fibroblasts: comparing normal fibroblasts to cancer-associated fibroblasts (CAFs).	Homo sapiens	Fibroblast	Ameloblastoma	Cancer	0, 8, 16, 24, 32, 40, 48	None
HUMAN FIBROBLAST CANCER VS NORMAL NORMAL: Circadian transcriptome of human fibroblasts: comparing normal fibroblasts to cancer-associated fibroblasts (CAFs).	Homo sapiens	Fibroblast	Control	Cancer	0, 8, 16, 24, 32, 40, 48	None
HUMAN GUTIERREZ 2016 BREAST CANCER: Gene expression analysis of cancerous breast cell lines determine the degree to which the circadian clock is damaged.	Homo sapiens	Breast Cancer Epithelial Cell Line	Breast Cancer	Cancer	0, 4, 8, 12, 16, 20, 24, 28	Publication
HUMAN LIU 2017 FIBROBLAST MYOGENIC-REPROGRAMMING: Human Fibroblast Reprogrammed to Myogenic Lineage via MyoD1	Homo sapiens	Fibroblast	Reprogramming	Genetic Perturbation	0, 8, 16, 24, 32, 40	None
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA ASPC1: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Pancreatic Cancer Cells	Pancreatic Cancer	Cancer	0, 4, 8, 12, 16, 20, 24	Publication
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA CAPAN1: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Pancreatic Cancer Cells	Pancreatic Cancer	Cancer	0, 4, 8, 12, 16, 20, 24	Publication
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA MIAPACA2: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Pancreatic Cancer Cells	Pancreatic Cancer	Cancer	0, 4, 8, 12, 16, 20, 24	Publication
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA ORGANOID: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Pancreatic Cancer Organoid	Pancreatic Cancer	Cancer	0, 4, 8, 12, 16, 20, 24	Publication
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA PANC1: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Pancreatic Cancer Cells	Pancreatic Cancer	Cancer	0, 4, 8, 12, 16, 20, 24	Publication
HUMAN SERUM AGING MAIN OLD: Luminescent clock reporter cells treated with human serum from young vs old donors (main experiment).	Homo sapiens	Foreskin	Old	Age	32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58	Publication
HUMAN SERUM AGING MAIN YOUNG: Luminescent clock reporter cells treated with human serum from young vs old donors (main experiment).	Homo sapiens	Foreskin	Young	Age	32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58	Publication
HUMAN SERUM AGING PRELIMINARY OLD: Preliminary pilot of serum factor aging effect: clock reporter cells exposed to young vs old human serum (small-scale).	Homo sapiens	Foreskin	Old	Age	12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58	Publication
HUMAN SERUM AGING PRELIMINARY YOUNG: Preliminary pilot of serum factor aging effect: clock reporter cells exposed to young vs old human serum (small-scale).	Homo sapiens	Foreskin	Young	Age	12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58	Publication
HUMAN SERUM NA 2017 TBI-PATIENT-1: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-10: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-11: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-12: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-2: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-3: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-4: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-5: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-6: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-7: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-8: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMAN SERUM NA 2017 TBI-PATIENT-9: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury	Injury	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	None
HUMANIZED FU 2024 HCC MOUSE CJ-HCC: Mouse tumor microenvironment in humanized hepatocellular carcinoma under control and chronic jet lag to examine circadian disruption in liver cancer.	Mus musculus	Humanized Hepatocellular Carcinoma	Liver Cancer, Chronic Jet Lag	Cancer, Light-Dark	2, 10, 18	Publication
HUMANIZED FU 2024 HCC MOUSE CONTROL-HCC: Mouse tumor microenvironment in humanized hepatocellular carcinoma under control and chronic jet lag to examine circadian disruption in liver cancer.	Mus musculus	Humanized Hepatocellular Carcinoma	Liver Cancer	Cancer, Light-Dark	2, 10, 18	Publication
HUMANIZED FU 2024 LIVER MOUSE CONTROL-LIVER: mouse host liver from humanized mice under control, NASH, and NASH with chronic jet lag to assess circadian effects on liver disease progression.	Mus musculus	Humanized Liver	Control	Disease, Light-Dark	2, 10, 18	Publication
HUMANIZED FU 2024 LIVER MOUSE NASH-CJ-LIVER: mouse host liver from humanized mice under control, NASH, and NASH with chronic jet lag to assess circadian effects on liver disease progression.	Mus musculus	Humanized Liver	Nonalcoholic Steatohepatitis, Chronic Jet Lag	Disease, Light-Dark	2, 10, 18	Publication
HUMANIZED FU 2024 LIVER MOUSE NASH-CONTROL-LIVER: mouse host liver from humanized mice under control, NASH, and NASH with chronic jet lag to assess circadian effects on liver disease progression.	Mus musculus	Humanized Liver	Nonalcoholic Steatohepatitis	Disease, Light-Dark	2, 10, 18	Publication
HUMANIZED LIVER HCV CONTROL: Circadian gene expression in human hepatocytes (in chimeric mouse liver) under control vs hepatitis C virus (HCV) infection.	Mus musculus	Liver	Control	Disease	0, 4, 8, 12, 16, 20	Publication
HUMANIZED LIVER HCV HCV: Circadian gene expression in human hepatocytes (in chimeric mouse liver) under control vs hepatitis C virus (HCV) infection.	Mus musculus	Liver	Hepatitis C Virus Infection	Disease	0, 4, 8, 12, 16, 20	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA CER HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Cerebellum	Intermittent Hypoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA CER NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Cerebellum	Normoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA HEART HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Heart	Intermittent Hypoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA HEART NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Heart	Normoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA KIDNEY HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Kidney	Intermittent Hypoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA KIDNEY NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Kidney	Normoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LIVER HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Liver	Intermittent Hypoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LIVER NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Liver	Normoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LUNG HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Lung	Intermittent Hypoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LUNG NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Lung	Normoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA MUSCLE HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Muscle	Intermittent Hypoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA MUSCLE NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Muscle	Normoxia	Oxygen-Level	0, 3, 6, 9, 12, 15, 18, 21	Publication
INSULIN AND LEPTIN OSCILLATIONS AD-LIB: Effect of timed-feeding (Ad-Lib or twice-a-night) on causing biphasic oscillations of circulating insulin and leptin.	Mus musculus	IWAT	Ad Libitum	Diet	0, 4, 8, 12, 16, 20	Publication
INSULIN AND LEPTIN OSCILLATIONS TWICE-A-NIGHT: Effect of timed-feeding (Ad-Lib or twice-a-night) on causing biphasic oscillations of circulating insulin and leptin.	Mus musculus	IWAT	Time-Restricted Feeding	Diet	0, 4, 8, 12, 16, 20	Publication
INTESTINAL EPITHELIUM BMAL1 KO: Intestinal-epithelium Bmal1 knockout linking the local clock to colonic inflammation.	Mus musculus	Colon	Core Clock Knockout	Knockout	0, 6, 12, 18	Publication
KETONE BODIES AND KETOGENESIS FEMALE AD-LIBITUM: Sex difference in liver transcriptome of mice on caloric restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Ad Libitum	Diet	2, 6, 10, 14, 18, 22	Publication
KETONE BODIES AND KETOGENESIS FEMALE CALORIE-RESTRICTION: Sex difference in liver transcriptome of mice on caloric restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Caloric Restriction	Diet	2, 6, 10, 14, 18, 22	Publication
KETONE BODIES AND KETOGENESIS MALE AD-LIBITUM: Liver transcriptome of mice on caloric restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Ad Libitum	Diet	2, 6, 10, 14, 18, 22	Publication
KETONE BODIES AND KETOGENESIS MALE CALORIE-RESTRICTION: Liver transcriptome of mice on caloric restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Caloric Restriction	Diet	2, 6, 10, 14, 18, 22	Publication
KIDNEY TUMOR CCRCC CONTROL: Circadian transcriptome profiling of kidney clear cell carcinoma (ccRCC) xenograft tumors treated with vehicle or HIF2a inhibitor PT2399.	Homo sapiens	CcRCC	Kidney Cancer	Cancer, Drug-Treatment	0, 12	Publication
KIDNEY TUMOR CCRCC HIF2A-INHIBITOR: Circadian transcriptome profiling of kidney clear cell carcinoma (ccRCC) xenograft tumors treated with vehicle or HIF2a inhibitor PT2399.	Homo sapiens	CcRCC	Kidney Cancer, Oncogenic Pathway Inhibition	Cancer, Drug-Treatment	0, 12	Publication
LIVER ZHANG BMAL1 FLOX: RNA-seq at CT2 and CT14 comparing wild-type, floxed controls, whole-body Bmal1 knockout, and hepatocyte-specific Bmal1 Knockout mice.	Mus musculus	Liver	Control	Knockout	2, 14	Publication
LIVER ZHANG BMAL1 GLOBAL-KO: RNA-seq at CT2 and CT14 comparing wild-type, floxed controls, whole-body Bmal1 knockout, and hepatocyte-specific Bmal1 Knockout mice.	Mus musculus	Liver	Core Clock Knockout	Knockout	2, 14	Publication
LIVER ZHANG BMAL1 LIVER-KO: RNA-seq at CT2 and CT14 comparing wild-type, floxed controls, whole-body Bmal1 knockout, and hepatocyte-specific Bmal1 Knockout mice.	Mus musculus	Liver	Core Clock Knockout	Knockout	2, 14	Publication
LIVER ZHANG BMAL1 WT: RNA-seq at CT2 and CT14 comparing wild-type, floxed controls, whole-body Bmal1 knockout, and hepatocyte-specific Bmal1 Knockout mice.	Mus musculus	Liver	Control	Knockout	2, 14	Publication
MATERNAL DIET AFFECT ON 16 WEEKS OFFSPRING HIGH-FAT: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	High-Fat Diet	Age, Diet	1, 5, 9, 13, 17, 21	Publication
MATERNAL DIET AFFECT ON 16 WEEKS OFFSPRING NORMAL-CHOW: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	Normal Chow	Age, Diet	1, 5, 9, 13, 17, 21	Publication
MATERNAL DIET AFFECT ON 4 WEEKS OFFSPRING HIGH-FAT: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	High-Fat Diet	Age, Diet	1, 5, 9, 13, 17, 21	Publication
MATERNAL DIET AFFECT ON 4 WEEKS OFFSPRING NORMAL-CHOW: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	Normal Chow	Age, Diet	1, 5, 9, 13, 17, 21	Publication
MICROGLIA LAWRENCE DIURNAL BBB BREAKDOWN CONTROL: Evening vs morning systemic lipopolysaccharide (LPS) highlighting microglia-dependent time-of-day differences in blood-brain barrier (BBB) disruption.	Mus musculus	Cortex	Control	Inflammation	1, 13	Publication
MICROGLIA LAWRENCE DIURNAL BBB BREAKDOWN LPS: Evening vs morning systemic lipopolysaccharide (LPS) highlighting microglia-dependent time-of-day differences in blood-brain barrier (BBB) disruption.	Mus musculus	Cortex	Lipopolysaccharide Treatment	Inflammation	1, 13	Publication
MONKEY LEMOS 2006 ADRENAL GLAND WT: Genome-wide expression profiling to determine whether the adrenal gland of rhesus monkeys shows temporal gene expression across a 24-h period.	Macaca mulatta	Adrenal Gland	Control	Control	3, 7, 11, 15, 19, 23	Publication
MOSQUITO CHOI 2014 THORAX LIVERPOOL-INFECTED: Dual RNA-seq time course analysis of Brugia Malayi parasite and host mosquito.	Aedes aegypti	Thorax	Brugia malayi Infection	Disease	24, 48, 72, 96	Publication
MOSQUITO CHOI 2014 THORAX RED-INFECTED: Dual RNA-seq time course analysis of Brugia Malayi parasite and host mosquito.	Aedes aegypti	Thorax	Brugia malayi Infection	Disease	24, 48, 72, 96	Publication
MOSQUITO GOLTSEV 2009 EMBRYO DEVELOPMENT: Detailed temporal microarray assays of mosquito gene expression profiles revealed that the cuticular genes display biphasic expression during A. gambiae embryogenesi	Anopheles gambiae	Embryo	Control	Control	2, 4, 6, 7, 8, 10, 13, 16, 19, 22, 25, 28, 31, 34, 37, 40, 43, 46	Publication
MOSQUITO KOUTSOS 2007 LARVA DEVELOPMENT: Genome-wide survey of mosquito gene expression profiles clustered temporally into developmental programs and spatially into adult tissue-specific patterns.	Anopheles gambiae	Larva	Control	Control	48, 96, 144, 192, 240	Publication
MOSQUITO MARINOTTI 2006 MID GUT BLOOD-FED: Examining sex-differential changes in gene expression after blood meal.	Anopheles gambiae	Digestive	Control	Control	3, 24, 48, 72, 96	Publication
MOSQUITO PTITSYN 2011 HEAD WT: Document circadian rhythms in multiple molecular pathways essential for growth, development, immune response, detoxification/pesticide resistance.	Aedes aegypti	Head	Control	Control	72, 76, 80, 84, 88, 92	Publication
MOSQUITO RUND 2011 HEAD LIGHT-DARK: DNA microarray analysis of An. gambiae under light/dark cycle (LD) and constant dark (DD) conditions.	Anopheles gambiae	Head	Control	Light-Dark	12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60	Publication
MOSQUITOE CIRCADIAN DISRUPTION BY AECYC KO: Impact of disrupting the circadian clock through a Cycle gene knockout (KO) on the transcriptome of Aedes aegypti mosquitoes.	Aedes aegypti	Whole Body	Core Clock Knockout	Knockout	7, 11, 15, 19	Publication
MOSQUITOE CIRCADIAN DISRUPTION BY AECYC WT: Impact of disrupting the circadian clock through a Cycle gene knockout (KO) on the transcriptome of Aedes aegypti mosquitoes.	Aedes aegypti	Whole Body	Control	Knockout	7, 11, 15, 19	Publication
MOUSE ADRENAL GLAND 2018 WT: Mouse Adrenal Gland Transcriptome	Mus musculus	Adrenal Gland	Control	Control	38, 42, 46, 50, 54, 58, 62, 66, 70, 74, 78, 82	None
MOUSE ANDREWS 2010 MUSCLE WT: Skeletal muscle with Bmal1(-/-) condition	Mus musculus	Muscle	Core Clock Knockout	Knockout	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE BALLANCE 2015 SUPRACHIASMATIC NUCLEUS WT: Circadian RNA expression profile of the mammalian biological clock, the suprachiasmatic nucleus (SCN) in C57/BL6 mice, at 2-hour resolution using microarrays.	Mus musculus	Suprachiasmatic Nucleus	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE BMAL1 EFFECTS ON AGING AND SURVIVAL KO: Bmal1 elimination and certain aging-related phenotypes without affecting lifespan or metabolism, suggesting a nuanced role of Bmal1 beyond its traditional circadian functions.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE BMAL1 EFFECTS ON AGING AND SURVIVAL WT: Bmal1 elimination and certain aging-related phenotypes without affecting lifespan or metabolism, suggesting a nuanced role of Bmal1 beyond its traditional circadian functions.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION CONTROL-27C: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart under different temperatures with BMAL1 knockout.	Mus musculus	Skin	27C	Knockout, Light-Dark, Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION CONTROL-32C: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart under different temperatures with BMAL1 knockout.	Mus musculus	Skin	32C	Knockout, Light-Dark, Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION CONTROL-37C: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart under different temperatures with BMAL1 knockout.	Mus musculus	Skin	37C	Knockout, Light-Dark, Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION CONTROL-AM: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart experimenting the knockout of BMAL1.	Mus musculus	Skin	Control	Knockout, Light-Dark, Temperature	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION CONTROL-PM: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart experimenting the knockout of BMAL1.	Mus musculus	Skin	Control	Knockout, Light-Dark, Temperature	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION KO-27C: MSFs kept in different temperatures and experimenting the knockout of BMAL1.	Mus musculus	Skin	Core Clock Knockout, 27C	Knockout, Light-Dark, Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION KO-32C: MSFs kept in different temperatures and experimenting the knockout of BMAL1.	Mus musculus	Skin	Core Clock Knockout, 32C	Knockout, Light-Dark, Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION KO-37C: MSFs kept in different temperatures and experimenting the knockout of BMAL1.	Mus musculus	Skin	Core Clock Knockout, 37C	Knockout, Light-Dark, Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION KO-AM: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart experimenting the knockout of BMAL1.	Mus musculus	Skin	Core Clock Knockout	Knockout, Light-Dark, Temperature	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48	Publication
MOUSE BMAL1 TEMPERATURE PHASED COMPENSATION KO-PM: Circadian analysis of skin fibroblasts. Morning Skin Fibroblasts (MSFs) collected 12 hours apart experimenting the knockout of BMAL1.	Mus musculus	Skin	Core Clock Knockout	Knockout, Light-Dark, Temperature	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45, 48	Publication
MOUSE CELL OGLCNAC INHIBITION CONTROL: Cultured human cells with normal vs dominant negative O-GlcNAcase (dnOGAh).	Mus musculus	Heart	Control	Genetic Perturbation	4, 8, 12, 16, 20, 24	Publication
MOUSE CELL OGLCNAC INHIBITION DNOGAH: Cultured human cells with normal vs dominant negative O-GlcNAcase (dnOGAh).	Mus musculus	Heart	Metabolic Regulator Inhibition	Genetic Perturbation	4, 8, 12, 16, 20, 24	Publication
MOUSE CHOROID PLEXUS AND SCN KO: Circadian regulation of cellular processes in mouse choroid plexus (ChP) and their dependence on signals from the clock in the suprachiasmatic nuclei (SCN).	Mus musculus	Choroid Plexus	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE CHOROID PLEXUS AND SCN WT: Circadian regulation of cellular processes in mouse choroid plexus (ChP) and their dependence on signals from the clock in the suprachiasmatic nuclei (SCN).	Mus musculus	Choroid Plexus	Control	Knockout	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE COLON SALT MR BMAL1 BMAL1-KO: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	Core Clock Knockout	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE COLON SALT MR BMAL1 HIGHSALT-DAY: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	High-Salt Diet, Light-Phase Feeding	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE COLON SALT MR BMAL1 HIGHSALT-NIGHT: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	High-Salt Diet, Dark-Phase Feeding	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE COLON SALT MR BMAL1 LOWSALT-DAY: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	Low-Salt Diet, Light-Phase Feeding	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE COLON SALT MR BMAL1 LOWSALT-NIGHT: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	Low-Salt Diet, Dark-Phase Feeding	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE COLON SALT MR BMAL1 MR-KO: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	Nuclear Receptor Knockout	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE COLON SALT MR BMAL1 WT: Circadian gene expression in mouse colon under different conditions: wild-type, Bmal1 Knockout, MR (mineralocorticoid receptor) Knockout, combined with high-salt vs low-salt feeding at day or night.	Mus musculus	Colon	Control	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE CORTEX SNORD116 WT FEMALE: Baseline circadian cortical transcriptomes of male and female wild-type mice under a 22-hour light-dark cycle.	Mus musculus	Left Prefrontal Cortex	Female	Sex	0, 3, 6, 9, 12, 15, 18, 21	Publication
MOUSE CORTEX SNORD116 WT MALE: Baseline circadian cortical transcriptomes of male and female wild-type mice under a 22-hour light-dark cycle.	Mus musculus	Left Prefrontal Cortex	Male	Sex	0, 3, 6, 9, 12, 15, 18, 21	Publication
MOUSE CRY1 R263Q BRAIN FEMALE-MUTANT: Brain circadian gene profiles in CRY1 R263Q mutant vs WT mice by sex.	Mus musculus	Whole Brain	Female, Core Clock Mutation	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q BRAIN FEMALE-WILD-TYPE: Brain circadian gene profiles in CRY1 R263Q mutant vs WT mice by sex.	Mus musculus	Whole Brain	Female, Control	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q BRAIN MALE-MUTANT: Brain circadian gene profiles in CRY1 R263Q mutant vs WT mice by sex.	Mus musculus	Whole Brain	Male, Core Clock Mutation	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q BRAIN MALE-WILD-TYPE: Brain circadian gene profiles in CRY1 R263Q mutant vs WT mice by sex.	Mus musculus	Whole Brain	Male, Control	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q LIVER FEMALE-MUTANT: Liver circadian transcriptomes in CRY1^R263Q^ mutant vs WT by sex.	Mus musculus	Liver	Female, Core Clock Mutation	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q LIVER FEMALE-WILD-TYPE: Liver circadian transcriptomes in CRY1^R263Q^ mutant vs WT by sex.	Mus musculus	Liver	Female, Control	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q LIVER MALE-MUTANT: Liver circadian transcriptomes in CRY1^R263Q^ mutant vs WT by sex.	Mus musculus	Liver	Male, Core Clock Mutation	Sex, Mutation	12, 22	Publication
MOUSE CRY1 R263Q LIVER MALE-WILD-TYPE: Liver circadian transcriptomes in CRY1^R263Q^ mutant vs WT by sex.	Mus musculus	Liver	Male, Control	Sex, Mutation	12, 22	Publication
MOUSE DAN 2020 FETAL KIDNEY: Examination of RNA-seq time series of developing fetal mouse kidnes from embryonic ages E18 to E20.5 (inclusive)	Mus musculus	Kidney	Control	Control	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48	Publication
MOUSE ECKEL MAHAN 2013 LIVER HIGH-FAT: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE ECKEL MAHAN 2013 LIVER NORMAL-CHOW: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	Normal Chow	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE ECKEL MAHAN 2022 LIVER KO: Inducible insulin receptor knockout mice to look at hepatic gene expression around the circadian clock	Mus musculus	Liver	Metabolic-Sensing Knockout	Knockout	0, 2, 4, 8, 12, 16, 20, 24	None
MOUSE ECKEL MAHAN 2022 LIVER WT: Inducible insulin receptor knockout mice to look at hepatic gene expression around the circadian clock	Mus musculus	Liver	Control	Knockout	0, 2, 4, 8, 12, 16, 20, 24	None
MOUSE ESSER HEART BMAL1 KO-FEMALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts.	Mus musculus	Ventricles	Core Clock Knockout, Female	Knockout, Sex	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE ESSER HEART BMAL1 KO-MALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts.	Mus musculus	Ventricles	Core Clock Knockout, Male	Knockout, Sex	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE ESSER HEART BMAL1 WT-FEMALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts.	Mus musculus	Ventricles	Control, Female	Knockout, Sex	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE ESSER HEART BMAL1 WT-MALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts.	Mus musculus	Ventricles	Control, Male	Knockout, Sex	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE FIBROBLAST UNRUH EXON 2024 BMAL1-KNOCKDOWN: Exon-level RNA profiling across a circadian cycle in mouse fibroblasts with Bmal1 knockdown.	Mus musculus	Fibroblast	Knockdown	Genetic Perturbation	24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE FIBROBLAST UNRUH EXON 2024 CONTROL: Exon-level RNA profiling across a circadian cycle in mouse fibroblasts with Bmal1 knockdown.	Mus musculus	Fibroblast	Control	Genetic Perturbation	24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE FIBROBLAST UNRUH INTRON 2024 BMAL1-KNOCKDOWN: Intron-level RNA profiling across a circadian cycle in mouse fibroblasts with Bmal1 knockdown.	Mus musculus	Fibroblast	Knockdown	Genetic Perturbation	24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE FIBROBLAST UNRUH INTRON 2024 CONTROL: Intron-level RNA profiling across a circadian cycle in mouse fibroblasts with Bmal1 knockdown.	Mus musculus	Fibroblast	Control	Genetic Perturbation	24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46	Publication
MOUSE GAUCHER 2018 LIVER CHRONIC-ETOH: Liver RNASeq chronically treated with ethanol	Mus musculus	Liver	Alcohol Exposure	Drug-Treatment	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2018 LIVER WT: Liver RNASeq chronically treated with ethanol	Mus musculus	Liver	Control	Drug-Treatment	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2022 HEART HYPOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Heart	Normoxia	Oxygen-Level	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2022 HEART NORMOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Heart	Intermittent Hypoxia	Oxygen-Level	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2022 KIDNEY HYPOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Kidney	Normoxia	Oxygen-Level	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2022 KIDNEY NORMOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Kidney	Intermittent Hypoxia	Oxygen-Level	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2022 LIVER HYPOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Liver	Normoxia	Oxygen-Level	0, 4, 8, 12, 16, 20	None
MOUSE GAUCHER 2022 LIVER NORMOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Liver	Intermittent Hypoxia	Oxygen-Level	0, 4, 8, 12, 16, 20	None
MOUSE GERSTNER 2016 CEREBRAL CORTEX WT: Comprehensive analysis of the effects of sleep deprivation and subsequent recovery sleep on gene expression in the mouse cortex.	Mus musculus	Cortex	Control	Sleep	0, 6, 7, 8, 11	Publication
MOUSE GRECO 2018 FIBROBLAST AHCY-KO: RNA-seq of mouse embryonic fibroblasts and suprachiasmatic nucleus samples comparing AHCY knockout, DZnep-mediated AHCY inhibition, and control conditions to examine how AHCY-dependent chromatin remodeling regulates circadian gene expression.	Mus musculus	Embryonic Fibroblasts	Epigenetic-Regulator Knockout	Knockout, Drug-Treatment	12, 16, 20, 24, 28, 32	Publication
MOUSE GRECO 2018 FIBROBLAST WT: RNA-seq of mouse embryonic fibroblasts and suprachiasmatic nucleus samples comparing AHCY knockout, DZnep-mediated AHCY inhibition, and control conditions to examine how AHCY-dependent chromatin remodeling regulates circadian gene expression.	Mus musculus	Embryonic Fibroblasts	Control	Knockout, Drug-Treatment	12, 16, 20, 24, 28, 32	Publication
MOUSE GRECO 2018 MEF DMSO: RNA-seq of mouse embryonic fibroblasts and suprachiasmatic nucleus samples comparing AHCY knockout, DZnep-mediated AHCY inhibition, and control conditions to examine how AHCY-dependent chromatin remodeling regulates circadian gene expression.	Mus musculus	Embryonic Fibroblasts	Control	Knockout, Drug-Treatment	12, 24	Publication
MOUSE GRECO 2018 MEF DZNEP: RNA-seq of mouse embryonic fibroblasts and suprachiasmatic nucleus samples comparing AHCY knockout, DZnep-mediated AHCY inhibition, and control conditions to examine how AHCY-dependent chromatin remodeling regulates circadian gene expression.	Mus musculus	Embryonic Fibroblasts	Epigenetic-Regulator Inhibition	Knockout, Drug-Treatment	12, 24	Publication
MOUSE GRECO 2018 SCN SALINE DZNEP: RNA-seq of mouse embryonic fibroblasts and suprachiasmatic nucleus samples comparing AHCY knockout, DZnep-mediated AHCY inhibition, and control conditions to examine how AHCY-dependent chromatin remodeling regulates circadian gene expression.	Mus musculus	Suprachiasmatic Nucleus	Epigenetic-Regulator Inhibition	Knockout, Drug-Treatment	3, 9, 15, 21	Publication
MOUSE GRECO 2018 SCN SALINE WT: RNA-seq of mouse embryonic fibroblasts and suprachiasmatic nucleus samples comparing AHCY knockout, DZnep-mediated AHCY inhibition, and control conditions to examine how AHCY-dependent chromatin remodeling regulates circadian gene expression.	Mus musculus	Suprachiasmatic Nucleus	Control	Knockout, Drug-Treatment	3, 9, 15, 21	Publication
MOUSE HEART CARDIOGR KO: Gene expression in mouse hearts lacking cardiomyocyte glucocorticoid receptor (GR) vs controls.	Mus musculus	Heart	Nuclear Receptor Knockout	Knockout	0, 12	Publication
MOUSE HEART CARDIOGR WT: Gene expression in mouse hearts lacking cardiomyocyte glucocorticoid receptor (GR) vs controls.	Mus musculus	Heart	Control	Knockout	0, 12	Publication
MOUSE HEPACTIC ALBCRE HYPOXIA: Transcriptional response of HIF1a, and Bmal1 knockout in hypoxia and normoxia	Mus musculus	Liver	Acute Hypoxia	Knockout, Oxygen-Level	4, 16	Publication
MOUSE HEPACTIC ALBCRE NORMOXIA: Transcriptional response of HIF1a, and Bmal1 knockout in hypoxia and normoxia	Mus musculus	Liver	Normoxia	Knockout, Oxygen-Level	4, 16	Publication
MOUSE HEPACTIC BMAL1 HYPOXIA: Transcriptional response of HIF1a, and Bmal1 knockout in hypoxia and normoxia	Mus musculus	Liver	Core Clock Knockout, Acute Hypoxia	Knockout, Oxygen-Level	4, 16	Publication
MOUSE HEPACTIC BMAL1 NORMOXIA: Transcriptional response of HIF1a, and Bmal1 knockout in hypoxia and normoxia	Mus musculus	Liver	Core Clock Knockout, Normoxia	Knockout, Oxygen-Level	4, 16	Publication
MOUSE HEPACTIC HIF1A HYPOXIA: Transcriptional response of HIF1a, and Bmal1 knockout in hypoxia and normoxia	Mus musculus	Liver	Hypoxia-Response Knockout, Acute Hypoxia	Knockout, Oxygen-Level	4, 16	Publication
MOUSE HEPACTIC HIF1A NORMOXIA: Transcriptional response of HIF1a, and Bmal1 knockout in hypoxia and normoxia	Mus musculus	Liver	Hypoxia-Response Knockout, Normoxia	Knockout, Oxygen-Level	4, 16	Publication
MOUSE HEPATOCYTE AND FEEDING KO AD-LIBITUM: Circadian analysis of whole liver from REV-ERBa/b knockout mice under ad-libitum feeding and reverse-phase feeding schedules.	Mus musculus	Liver	Core Clock Knockout, Ad Libitum	Knockout, Diet	1, 4, 7, 10, 13, 16, 19, 22	Publication
MOUSE HEPATOCYTE AND FEEDING KO REVERSE-PHASE-FEEDING: Circadian analysis of whole liver from REV-ERBa/b knockout mice under ad-libitum feeding and reverse-phase feeding schedules.	Mus musculus	Liver	Core Clock Knockout, Reverse-Phase Feeding	Knockout, Diet	1, 4, 7, 10, 13, 16, 19, 22	Publication
MOUSE HEPATOCYTE AND FEEDING WT AD-LIBITUM: Circadian analysis of whole liver from wild-type mice under ad-libitum feeding and reverse-phase feeding schedules.	Mus musculus	Liver	Ad Libitum	Knockout, Diet	1, 4, 7, 10, 13, 16, 19, 22	Publication
MOUSE HEPATOCYTE AND FEEDING WT REVERSE-PHASE-FEEDING: Circadian analysis of whole liver from wild-type mice under ad-libitum feeding and reverse-phase feeding schedules.	Mus musculus	Liver	Reverse-Phase Feeding	Knockout, Diet	1, 4, 7, 10, 13, 16, 19, 22	Publication
MOUSE HEPATOCYTE IN ENDOTHELIAL CELLS KO: Circadian analysis of isolated liver Kupffer cells and endothelial cells in wild-type and REV-ERBa/b knockout mice.	Mus musculus	Liver	Core Clock Knockout	Knockout	4, 10, 16, 22	Publication
MOUSE HEPATOCYTE IN ENDOTHELIAL CELLS WT: Circadian analysis of isolated liver Kupffer cells and endothelial cells in wild-type and REV-ERBa/b knockout mice.	Mus musculus	Liver	Control	Knockout	4, 10, 16, 22	Publication
MOUSE HEPATOCYTE IN KUPFFER CELLS KO: Circadian analysis of isolated liver Kupffer cells and endothelial cells in wild-type and REV-ERBa/b knockout mice.	Mus musculus	Liver	Core Clock Knockout	Knockout	4, 10, 16, 22	Publication
MOUSE HEPATOCYTE IN KUPFFER CELLS WT: Circadian analysis of isolated liver Kupffer cells and endothelial cells in wild-type and REV-ERBa/b knockout mice.	Mus musculus	Liver	Control	Knockout	4, 10, 16, 22	Publication
MOUSE HIGH FAT DIET KIDNEY 2021 HFD: RNA-Seq circadian analyses of normal chow (NC) vs high-fat diet (HFD) in mouse kidney.	Mus musculus	Kidney	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	None
MOUSE HIGH FAT DIET KIDNEY 2021 NC: RNA-Seq circadian analyses of normal chow (NC) vs high-fat diet (HFD) in mouse kidney.	Mus musculus	Kidney	Normal Chow	Diet	0, 4, 8, 12, 16, 20	None
MOUSE HIGH FAT DIET KIDNEY 2025 HFD: Circadian transcriptomic analysis of mouse kidney under normal chow vs high-fat diet (HFD).	Mus musculus	Kidney	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE HIGH FAT DIET KIDNEY 2025 NORMAL-CHOW: Circadian transcriptomic analysis of mouse kidney under normal chow vs high-fat diet (HFD).	Mus musculus	Kidney	Normal Chow	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE HOOGERWERF 2008 DISTAL COLON WT: Microarray transcriptional profiling of mRNA expression in the mouse distal colon.	Mus musculus	Distal Colon	Control	Control	0, 4, 8, 12, 16, 20	Publication
MOUSE INFLUENZA IL10 FEMALE-AB: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection.	Mus musculus	Lung	Influenza Infection, IL-10 Receptor Blockade, Female	Disease, Immune Perturbation, Sex	11, 23	Publication
MOUSE INFLUENZA IL10 FEMALE-IGG: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection.	Mus musculus	Lung	Influenza Infection, Female	Disease, Immune Perturbation, Sex	11, 23	Publication
MOUSE INFLUENZA IL10 MALE-AB: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection.	Mus musculus	Lung	Influenza Infection, IL-10 Receptor Blockade, Male	Disease, Immune Perturbation, Sex	11, 23	Publication
MOUSE INFLUENZA IL10 MALE-IGG: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection.	Mus musculus	Lung	Influenza Infection, Male	Disease, Immune Perturbation, Sex	11, 23	Publication
MOUSE KELLER 2009 MACROPHAGES DARK: Macrophages in all dark.	Mus musculus	Cells	Constant Darkness	Light-Dark	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE KIDNEY VS LIVER CIRCADIAN 2024 KIDNEY: Baseline circadian transcriptome of mouse kidney, highlighting tissue-specific circadian genes linked to aging and longevity.	Mus musculus	Kidney	Control	Control	0, 4, 8, 12, 16, 20	Publication
MOUSE KIDNEY VS LIVER CIRCADIAN 2024 LIVER: Baseline circadian transcriptome of mouse liver, highlighting tissue-specific circadian genes linked to aging and longevity.	Mus musculus	Liver	Control	Control	0, 4, 8, 12, 16, 20	Publication
MOUSE KINOUCHI 2018 LIVER FASTING: Liver RNASeq in a fasting condition	Mus musculus	Liver	24-hr Fasting	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE KINOUCHI 2018 LIVER NORMAL-CHOW: Liver RNASeq in a fasting condition	Mus musculus	Liver	Normal Chow	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE KINOUCHI 2018 MUSCLE FASTING: Muscle RNASeq in a fasting condition	Mus musculus	Gastrocnemius	24-hr Fasting	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE KINOUCHI 2018 MUSCLE NORMAL-CHOW: Muscle RNASeq in a fasting condition	Mus musculus	Gastrocnemius	Normal Chow	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE KONRAD 2017 VENTRAL HIPPOCAMPUS TEMPORAL-LOBE-EPILEPTIC: Hippocampus RNASeq in an experiment comparing epileptic vs normal brain.	Mus musculus	Ventral Hippocampus	Epilepsy	Disease	3, 7, 11, 15, 19, 23	Publication
MOUSE KONRAD 2017 VENTRAL HIPPOCAMPUS WT: Hippocampus RNASeq in an experiment comparing epileptic vs normal brain.	Mus musculus	Ventral Hippocampus	Control	Disease	3, 7, 11, 15, 19, 23	Publication
MOUSE LAZAR ARCUATE NUCLEUS CONTROL: Circadian gene expression in the hypothalamic arcuate nucleus of control vs liver-clock disrupted (Rev-Erba/beta double knockout in hepatocytes, HepDKO) mice. The loss of the liver clock sends altered signals via vagal afferents, leading to reprogramming of rhythmic transcripts in the arcuate nucleus that regulate feeding behavior and metabolism.	Mus musculus	Arcuate Nucleus	Control	Knockout	4, 10, 16, 22	Publication
MOUSE LAZAR ARCUATE NUCLEUS HEPDKO: Circadian gene expression in the hypothalamic arcuate nucleus of control vs liver-clock disrupted (Rev-Erba/beta double knockout in hepatocytes, HepDKO) mice. The loss of the liver clock sends altered signals via vagal afferents, leading to reprogramming of rhythmic transcripts in the arcuate nucleus that regulate feeding behavior and metabolism.	Mus musculus	Arcuate Nucleus	Core Clock Knockout	Knockout	4, 10, 16, 22	Publication
MOUSE LAZAR NODOSE GANGLION CONTROL: Circadian transcriptomic analysis of the vagal nodose ganglion in control vs HepDKO mice. Eliminating the liver's clock (Rev-Erba/beta in hepatocytes) alters rhythmic gene expression in vagal sensory neurons, suggesting that liver clock disruption feeds back to the peripheral nervous system and modulates neuroimmune and metabolic signaling rhythms.	Mus musculus	Nodose Ganglion	Control	Knockout	4, 10, 16, 22	Publication
MOUSE LAZAR NODOSE GANGLION HEPDKO: Circadian transcriptomic analysis of the vagal nodose ganglion in control vs HepDKO mice. Eliminating the liver's clock (Rev-Erba/beta in hepatocytes) alters rhythmic gene expression in vagal sensory neurons, suggesting that liver clock disruption feeds back to the peripheral nervous system and modulates neuroimmune and metabolic signaling rhythms.	Mus musculus	Nodose Ganglion	Core Clock Knockout	Knockout	4, 10, 16, 22	Publication
MOUSE LIGHT PHASESHIFT NORMAL: Circadian gene expression following an abrupt 8-hour advance of the light/dark cycle vs normal LD controls.	Mus musculus	Liver	Control	Light-Dark	0, 4, 8, 12, 16, 20	Publication
MOUSE LIGHT PHASESHIFT PHASE-SHIFT: Circadian gene expression following an abrupt 8-hour advance of the light/dark cycle vs normal LD controls.	Mus musculus	Liver	Phase Shift	Light-Dark	0, 4, 8, 12, 16, 20	Publication
MOUSE LIVER ESRRG DIET STRAINS HFD-129S1: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	High-Fat Diet	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER ESRRG DIET STRAINS HFD-129S1-ESRRG-GFP: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	High-Fat Diet	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER ESRRG DIET STRAINS HFD-129S1-ESRRGL-KO: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	High-Fat Diet, Nuclear Receptor Knockout	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER ESRRG DIET STRAINS HFD-C57BL: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	High-Fat Diet	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER ESRRG DIET STRAINS HFD-C57BL-ESRRGL-KO: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	High-Fat Diet, Nuclear Receptor Knockout	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER ESRRG DIET STRAINS NC-129S1: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	Normal Chow	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER ESRRG DIET STRAINS NC-C57BL: Integrated circadian study of diet, strain, and genotype in mouse liver: C57BL/6J and 129S1/SvImJ mice fed high-fat diet (HFD) or normal chow (NC), with hepatocyte-specific Esrrg knockout and Esrrg-GFP reporter/control groups.	Mus musculus	Liver	Normal Chow	Knockout, Diet	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER GCN2 LEUDEPRIVATION KO-CONTROL: Time-series liver transcriptomes from WT vs GCN2-Knockout mice under control vs leucine-deprived diets.	Mus musculus	Liver	Metabolic-Sensing Knockout	Knockout, Diet	3, 15	Publication
MOUSE LIVER GCN2 LEUDEPRIVATION KO-LEUD: Time-series liver transcriptomes from WT vs GCN2-Knockout mice under control vs leucine-deprived diets.	Mus musculus	Liver	Metabolic-Sensing Knockout, Leucine-Devoid Diet	Knockout, Diet	3, 15	Publication
MOUSE LIVER GCN2 LEUDEPRIVATION WT-CONTROL: Time-series liver transcriptomes from WT vs GCN2-Knockout mice under control vs leucine-deprived diets.	Mus musculus	Liver	Control	Knockout, Diet	3, 15	Publication
MOUSE LIVER GCN2 LEUDEPRIVATION WT-LEUD: Time-series liver transcriptomes from WT vs GCN2-Knockout mice under control vs leucine-deprived diets.	Mus musculus	Liver	Leucine-Devoid Diet	Knockout, Diet	3, 15	Publication
MOUSE LIVER MASRI 2014 SIRT1-KO: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Metabolic-Sensing Knockout	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE LIVER MASRI 2014 SIRT1-WT: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE LIVER MASRI 2014 SIRT6-KO: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Metabolic-Sensing Knockout	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE LIVER MASRI 2014 SIRT6-WT: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE LIVER MUSCLE DUB RE LIVER LMRE: Circadian transcriptomic analysis of mouse liver and muscle under double-knockout and tissue-specific rescue (re-expression) conditions.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER MUSCLE DUB RE LIVER WT DUB: Circadian transcriptomic analysis of mouse liver and muscle under double-knockout and tissue-specific rescue (re-expression) conditions.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER MUSCLE DUB RE MUS LMRE: Circadian transcriptomic analysis of mouse liver and muscle under double-knockout and tissue-specific rescue (re-expression) conditions.	Mus musculus	Muscle	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER MUSCLE DUB RE MUS WT DUB: Circadian transcriptomic analysis of mouse liver and muscle under double-knockout and tissue-specific rescue (re-expression) conditions.	Mus musculus	Muscle	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER PGR 2018 CONTROL: Liver RNA-seq from control and Policaptil Gel Retard (PGR)-treated mice.	Mus musculus	Liver	Control	Drug-Treatment	0, 4, 8, 12, 16, 20	None
MOUSE LIVER PGR 2018 TREATMENT: Liver RNA-seq from control and Policaptil Gel Retard (PGR)-treated mice.	Mus musculus	Liver	Epigenetic-Regulator Inhibition	Drug-Treatment	0, 4, 8, 12, 16, 20	None
MOUSE LIVER SCN RESCUE KO: Circadian transcriptomic analysis of mouse liver under wild-type, Bmal1 knockout, and SCN-specific rescue (re-expression) conditions.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER SCN RESCUE RE: Circadian transcriptomic analysis of mouse liver under wild-type, Bmal1 knockout, and SCN-specific rescue (re-expression) conditions.	Mus musculus	Liver	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER SCN RESCUE WT: Circadian transcriptomic analysis of mouse liver under wild-type, Bmal1 knockout, and SCN-specific rescue (re-expression) conditions.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE LIVER THRBETA KO: Diurnal liver gene expression in THRbeta-Knockout vs WT mice.	Mus musculus	Liver	Nuclear Receptor Knockout	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER THRBETA WT: Diurnal liver gene expression in THRbeta-Knockout vs WT mice.	Mus musculus	Liver	Control	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE LIVER TIMED FASTING AD-LIB: Liver circadian transcriptomes under different feeding regimens: ad libitum feeding, daily caloric restriction with fasting period.	Mus musculus	Liver	Ad Libitum	Diet	0, 6, 14, 22	Publication
MOUSE LIVER TIMED FASTING CALORIE-RESTRICTION: Liver circadian transcriptomes under different feeding regimens: ad libitum feeding, daily caloric restriction with fasting period.	Mus musculus	Liver	Caloric Restriction	Diet	0, 6, 14, 22	Publication
MOUSE LIVER TIMED FASTING FASTING: Liver circadian transcriptomes under different feeding regimens: ad libitum feeding, daily caloric restriction with fasting period.	Mus musculus	Liver	Unanticipated Fasting	Diet	0, 6, 14, 22	Publication
MOUSE LUNG AGE DEPENDENT OLD: Circadian gene expression comparison in lungs of young adult vs old mice.	Mus musculus	Lung	Old	Age	0, 4, 8, 12, 16, 20	Publication
MOUSE LUNG AGE DEPENDENT YOUNG: Circadian gene expression comparison in lungs of young adult vs old mice.	Mus musculus	Lung	Young	Age	0, 4, 8, 12, 16, 20	Publication
MOUSE MASRI 2016 LIVER LUNG-WT: Lung adenocarcinoma operates as an endogenous reorganizer of circadian metabolism.	Mus musculus	Liver	Control	Cancer	0, 4, 8, 12, 16, 20	None
MOUSE MASRI 2016 LIVER TUMOR-BEARING-LUNG: Lung adenocarcinoma operates as an endogenous reorganizer of circadian metabolism.	Mus musculus	Liver	Lung Cancer	Cancer	0, 4, 8, 12, 16, 20	None
MOUSE MCCLUNG 2024 FEMALE-PV: Circadian translatome analysis of mouse medial prefrontal cortex comparing isolated pyramidal (Pyr) cells and parvalbumin (PV) interneurons from male and female mice.	Mus musculus	Prefrontal Cortex	Female	Sex	2, 6, 10, 14, 18, 22	None
MOUSE MCCLUNG 2024 FEMALE-PYR: Circadian translatome analysis of mouse medial prefrontal cortex comparing isolated pyramidal (Pyr) cells and parvalbumin (PV) interneurons from male and female mice.	Mus musculus	Prefrontal Cortex	Female	Sex	2, 6, 10, 14, 18, 22	None
MOUSE MCCLUNG 2024 MALE-PV: Circadian translatome analysis of mouse medial prefrontal cortex comparing isolated pyramidal (Pyr) cells and parvalbumin (PV) interneurons from male and female mice.	Mus musculus	Prefrontal Cortex	Male	Sex	2, 6, 10, 14, 18, 22	None
MOUSE MCCLUNG 2024 MALE-PYR: Circadian translatome analysis of mouse medial prefrontal cortex comparing isolated pyramidal (Pyr) cells and parvalbumin (PV) interneurons from male and female mice.	Mus musculus	Prefrontal Cortex	Male	Sex	2, 6, 10, 14, 18, 22	None
MOUSE MILLER 2007 LIVER WT: Mouse Wild Type Liver Transcriptome	Mus musculus	Liver	Control	Control	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE MOISAN 2021 DIET HF: Mouse hippocampus circadian transcriptome study comparing different diet conditions, including high-fat diet, normal chow, and recovery-phase diet groups.	Mus musculus	Hippocampus	High-Fat Diet	Diet	0, 6, 12, 18	None
MOUSE MOISAN 2021 DIET HFR: Mouse hippocampus circadian transcriptome study comparing different diet conditions, including high-fat diet, normal chow, and recovery-phase diet groups.	Mus musculus	Hippocampus	High-Fat Diet Recovery	Diet	0, 6, 12, 18	None
MOUSE MOISAN 2021 DIET NC: Mouse hippocampus circadian transcriptome study comparing different diet conditions, including high-fat diet, normal chow, and recovery-phase diet groups.	Mus musculus	Hippocampus	Normal Chow	Diet	0, 6, 12, 18	None
MOUSE MOISAN 2021 DIET NCR: Mouse hippocampus circadian transcriptome study comparing different diet conditions, including high-fat diet, normal chow, and recovery-phase diet groups.	Mus musculus	Hippocampus	Normal Chow	Diet	0, 6, 12, 18	None
MOUSE MPFC MCCLUNG 2025 FEMALE: Sex-specific circadian transcriptomic rhythms in the mouse medial prefrontal cortex (mPFC).	Mus musculus	Prefrontal Cortex	Female	Sex	2, 6, 10, 14, 18, 22	Publication
MOUSE MPFC MCCLUNG 2025 MALE: Sex-specific circadian transcriptomic rhythms in the mouse medial prefrontal cortex (mPFC).	Mus musculus	Prefrontal Cortex	Male	Sex	2, 6, 10, 14, 18, 22	Publication
MOUSE MUSCLE EXERCISE KO FEMALE KO-EXERCISE: Female mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene knockout.	Mus musculus	Gastrocnemius	Female, Hypoxia-Response Knockout, Treadmill Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO FEMALE KO-SEDENTARY: Female mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene knockout.	Mus musculus	Gastrocnemius	Female, Hypoxia-Response Knockout, No Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO FEMALE WT-EXERCISE: Female mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene knockout.	Mus musculus	Gastrocnemius	Female, Treadmill Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO FEMALE WT-SEDENTARY: Female mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene knockout.	Mus musculus	Gastrocnemius	Female, No Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO MALE KO-EXERCISE: Male mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene Knockout.	Mus musculus	Gastrocnemius	Male, Hypoxia-Response Knockout, Treadmill Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO MALE KO-SEDENTARY: Male mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene Knockout.	Mus musculus	Gastrocnemius	Male, Hypoxia-Response Knockout, No Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO MALE WT-EXERCISE: Male mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene Knockout.	Mus musculus	Gastrocnemius	Male, Treadmill Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE MUSCLE EXERCISE KO MALE WT-SEDENTARY: Male mouse gastrocnemius transcriptomes under exercise vs sedentary, with or without the target gene Knockout.	Mus musculus	Gastrocnemius	Male, No Exercise	Sex, Knockout, Exercise	3, 15	Publication
MOUSE NEUTROPHIL DEPLETION BONEMARROW DEPLETED: Circadian transcriptional profiles of bone marrow under control vs neutrophil-depleted conditions, demonstrating that neutrophil loss disrupts normal rhythmic gene expression in extracellular matrix pathways.	Mus musculus	Bone Marrow	Neutrophil Depletion	Immune Cell Depletion	1, 5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION BONEMARROW WT: Circadian transcriptional profiles of bone marrow under control vs neutrophil-depleted conditions, demonstrating that neutrophil loss disrupts normal rhythmic gene expression in extracellular matrix pathways.	Mus musculus	Bone Marrow	Control	Immune Cell Depletion	1, 5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION INTESTINE DEPLETED: Circadian gene expression in the small intestine under neutrophil-depleted vs control conditions, showing that loss of neutrophils alters rhythmic matrix-associated transcripts and circadian patterns of gene expression.	Mus musculus	Intestine	Neutrophil Depletion	Immune Cell Depletion	5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION INTESTINE WT: Circadian gene expression in the small intestine under neutrophil-depleted vs control conditions, showing that loss of neutrophils alters rhythmic matrix-associated transcripts and circadian patterns of gene expression.	Mus musculus	Intestine	Control	Immune Cell Depletion	5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION LIVER DEPLETED: Circadian transcriptome of liver tissue in control vs neutrophil-depleted mice, indicating that neutrophil elimination disrupts normal circadian expression patterns of liver genes.	Mus musculus	Liver	Neutrophil Depletion	Immune Cell Depletion	1, 5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION LIVER WT: Circadian transcriptome of liver tissue in control vs neutrophil-depleted mice, indicating that neutrophil elimination disrupts normal circadian expression patterns of liver genes.	Mus musculus	Liver	Control	Immune Cell Depletion	1, 5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION LUNG DEPLETED: Circadian gene expression in lung tissue with and without neutrophil depletion.	Mus musculus	Lung	Neutrophil Depletion	Immune Cell Depletion	1, 5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION LUNG WT: Circadian gene expression in lung tissue with and without neutrophil depletion.	Mus musculus	Lung	Control	Immune Cell Depletion	1, 5, 9, 13, 17, 21	Publication
MOUSE NEUTROPHIL DEPLETION SKIN BMAL1-KO: Circadian transcriptional profile of skin under control, neutrophil-depleted, and neutrophil-specific Bmal1 knockout conditions.	Mus musculus	Skin	Core Clock Knockout	Immune Cell Depletion, Knockout	1, 3, 4, 5, 7, 9, 10, 12, 13, 15, 16, 18, 19, 21, 22, 24	Publication
MOUSE NEUTROPHIL DEPLETION SKIN DEPLETED: Circadian transcriptional profile of skin under control, neutrophil-depleted, and neutrophil-specific Bmal1 knockout conditions.	Mus musculus	Skin	Neutrophil Depletion	Immune Cell Depletion, Knockout	1, 3, 4, 5, 7, 9, 10, 12, 13, 15, 16, 18, 19, 21, 22, 24	Publication
MOUSE NEUTROPHIL DEPLETION SKIN WT: Circadian transcriptional profile of skin under control, neutrophil-depleted, and neutrophil-specific Bmal1 knockout conditions.	Mus musculus	Skin	Control	Immune Cell Depletion, Knockout	1, 3, 4, 5, 7, 9, 10, 12, 13, 15, 16, 18, 19, 21, 22, 24	Publication
MOUSE NIGHT FEEDING KO: RNASeq of liver in WT and Bmal1 KO mice under night feeding condition	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE NIGHT FEEDING WT: RNASeq of liver in WT and Bmal1 KO mice under night feeding condition	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE NOLAN SCN CRENEG-CONTROL: Circadian gene expression in the suprachiasmatic nucleus (SCN) of mice before and after tamoxifen-induced conditional deletion of the transcription factor Zfhx3, compared with Cre-negative controls.	Mus musculus	Suprachiasmatic Nucleus	Cre-Negative Control	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE NOLAN SCN POSTTAM-ZFHX3-KO: Circadian gene expression in the suprachiasmatic nucleus (SCN) of mice before and after tamoxifen-induced conditional deletion of the transcription factor Zfhx3, compared with Cre-negative controls.	Mus musculus	Suprachiasmatic Nucleus	Transcription Factor Knockout	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE NOLAN SCN PRETAM-CONTROL: Circadian gene expression in the suprachiasmatic nucleus (SCN) of mice before and after tamoxifen-induced conditional deletion of the transcription factor Zfhx3, compared with Cre-negative controls.	Mus musculus	Suprachiasmatic Nucleus	Pre-Tamoxifen Control	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE PANDA 2002 LIVER WT: Gene expression profiling to identify cycling transcripts in the SCN and in the liver	Mus musculus	Liver	Control	Control	30, 34, 38, 42, 46, 50, 54, 58, 62, 66, 70, 74	Publication
MOUSE PANDA 2002 SCN WT: Gene expression profiling to identify cycling transcripts in the SCN and in the liver	Mus musculus	Suprachiasmatic Nucleus	Control	Control	18, 22, 26, 30, 34, 38, 42, 50, 54, 58, 62	Publication
MOUSE PETRUS 2020 LIVER CONTROL-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Dark-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 LIVER CONTROL-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 LIVER TRYPTOPHAN-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Tryptophan-Modified Diet, Dark-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 LIVER TRYPTOPHAN-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Tryptophan-Modified Diet, Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 SCN CONTROL-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Suprachiasmatic Nucleus	Dark-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 SCN CONTROL-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Suprachiasmatic Nucleus	Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 SCN TRYPTOPHAN-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Suprachiasmatic Nucleus	Tryptophan-Modified Diet, Dark-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS 2020 SCN TRYPTOPHAN-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Suprachiasmatic Nucleus	Tryptophan-Modified Diet, Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PREGNANCY METABOLIC FETUS CIRCADIAN-DISRUPTION: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Phase Shift	Light-Dark	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC FETUS CONTROL: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Control	Light-Dark	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC MOTHER CIRCADIAN-DISRUPTION: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Phase Shift	Light-Dark	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC MOTHER CONTROL: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Control	Light-Dark	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC OFFSPRING CIRCADIAN-DISRUPTION HIGH-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Phase Shift, High-Fat Diet	Light-Dark, Diet	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC OFFSPRING CIRCADIAN-DISRUPTION LOW-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Phase Shift, Low-Fat Diet	Light-Dark, Diet	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC OFFSPRING CONTROL HIGH-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	High-Fat Diet	Light-Dark, Diet	0, 6, 12, 18	Publication
MOUSE PREGNANCY METABOLIC OFFSPRING CONTROL LOW-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Low-Fat Diet	Light-Dark, Diet	0, 6, 12, 18	Publication
MOUSE RESTRICTED FEEDING BAT AD-LIB: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Brown Adipose Tissue	Ad Libitum	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RESTRICTED FEEDING BAT CR-DAY: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Brown Adipose Tissue	Caloric Restriction, Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RESTRICTED FEEDING LIVER AD-LIB: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Ad Libitum	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RESTRICTED FEEDING LIVER CR-DAY: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Caloric Restriction, Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RESTRICTED FEEDING LIVER CR-NIGHT: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Caloric Restriction, Dark-Phase Feeding	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RESTRICTED FEEDING LIVER TRF-DAY: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Time-Restricted Feeding, Light-Phase Feeding	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RESTRICTED FEEDING LIVER TRF-NIGHT: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Time-Restricted Feeding, Dark-Phase Feeding	Diet	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44	Publication
MOUSE RUDIC 2005 AORTA WT: Bioinformatic Analysis of Circadian Gene Oscillation in Mouse Aorta	Mus musculus	Aorta	Control	Control	18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62	Publication
MOUSE SASSONE LIVER KO: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE SASSONE LIVER RE: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE SASSONE LIVER WT: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE SCN CONTROL: Transcriptome of the suprachiasmatic nucleus (SCN) in control and high-fat conditions	Mus musculus	Suprachiasmatic Nucleus	Control	Diet	0, 4, 8, 12, 16, 20	None
MOUSE SCN HIGH-FAT: Transcriptome of the suprachiasmatic nucleus (SCN) in control and high-fat conditions	Mus musculus	Suprachiasmatic Nucleus	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	None
MOUSE SENGUPTA INFLUENZA LD-FEMALE: Circadian study of influenza infection in mice.	Mus musculus	Lung	Influenza Infection	Disease	11, 23	Publication
MOUSE SKELETAL MUSCLE SIRT1 2018 CONTROL: Gastrocnemius expression data from control and SF1-neuron-specific Sirt1 knockout mice.	Mus musculus	Gastrocnemius	Control	Knockout	7, 13, 19, 25	None
MOUSE SKELETAL MUSCLE SIRT1 2018 KO: Gastrocnemius expression data from control and SF1-neuron-specific Sirt1 knockout mice.	Mus musculus	Gastrocnemius	Metabolic-Sensing Knockout	Knockout	7, 13, 19, 25	None
MOUSE STRIATUM 2020 COCAINE: RNASeq of striatum in a cocaine treatment experiment with D2R knockout	Mus musculus	Ventral Striatum	Cocaine Exposure	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	Publication
MOUSE STRIATUM 2020 COCAINE-D2R-KO: RNASeq of striatum in a cocaine treatment experiment with D2R knockout	Mus musculus	Ventral Striatum	Cocaine Exposure, Dopamine Signaling Knockout	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	Publication
MOUSE STRIATUM 2020 D2R-KO: RNASeq of striatum in a cocaine treatment experiment with D2R knockout	Mus musculus	Ventral Striatum	Saline Vehicle Control, Dopamine Signaling Knockout	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	Publication
MOUSE STRIATUM 2020 WT: RNASeq of striatum in a cocaine treatment experiment with D2R knockout	Mus musculus	Ventral Striatum	Saline Vehicle Control	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	Publication
MOUSE TERAJIMA 2017 LIVER ADARB1-KO: Identification A-to-I RNA editing as a key mechanism of post-transcriptional regulation in the circadian clockwork.	Mus musculus	Liver	RNA Editing Knockout	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE TERAJIMA 2017 LIVER WT: Identification A-to-I RNA editing as a key mechanism of post-transcriptional regulation in the circadian clockwork.	Mus musculus	Liver	Control	Knockout	2, 6, 10, 14, 18, 22	Publication
MOUSE TESTIS SERTOLI CELL CONTROL CONTROL: Control Sertoli cell expression data from mouse testis.	Sus scrofa	Sertoli Cells	Control	Control	12, 16, 20, 24, 28, 32	None
MOUSE TOGNINI 2017 INTESTINAL EPITHELIA KETOGENIC-DIET: Intestinal epithelia microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Intestine	Ketogenic Diet	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE TOGNINI 2017 INTESTINAL EPITHELIA NORMAL-CHOW: Intestinal epithelia microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Intestine	Normal Chow	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE TOGNINI 2017 LIVER KETOGENIC-DIET: Liver microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Liver	Ketogenic Diet	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE TOGNINI 2017 LIVER NORMAL-CHOW: Liver microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Liver	Normal Chow	Diet	0, 4, 8, 12, 16, 20	Publication
MOUSE TOGNINI LIVER CLOCK KNOCKOUT AD LIBITUM KO: Mouse knockout and rescue experiment of clock in liver with Ad Libitum Feeding	Mus musculus	Liver	Ad Libitum, Core Clock Knockout	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE TOGNINI LIVER CLOCK KNOCKOUT AD LIBITUM RE: Mouse knockout and rescue experiment of clock in liver with Ad Libitum Feeding	Mus musculus	Liver	Ad Libitum, Rescue	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE TOGNINI LIVER CLOCK KNOCKOUT AD LIBITUM WT: Mouse knockout and rescue experiment of clock in liver with Ad Libitum Feeding	Mus musculus	Liver	Ad Libitum	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE TOGNINI LIVER CLOCK KNOCKOUT TRF KO: Mouse knockout and rescue experiment of clock in liver with TRF Diet	Mus musculus	Liver	Time-Restricted Feeding, Core Clock Knockout	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE TOGNINI LIVER CLOCK KNOCKOUT TRF RE: Mouse knockout and rescue experiment of clock in liver with TRF Diet	Mus musculus	Liver	Time-Restricted Feeding, Rescue	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE TOGNINI LIVER CLOCK KNOCKOUT TRF WT: Mouse knockout and rescue experiment of clock in liver with TRF Diet	Mus musculus	Liver	Time-Restricted Feeding	Knockout, Diet	0, 4, 8, 12, 16, 20	None
MOUSE YANG 2017 BREAST WT: Cellular mechano-environment regulates the mammary circadian clock.	Mus musculus	Breast	Control	Control	3, 7, 11, 15, 19, 23, 27, 31, 35, 39, 43, 47	Publication
MOUSE ZHANG 2014 ADRENAL GLAND WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Adrenal Gland	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 AORTA WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Aorta	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 BRAIN STEM WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Brainstem	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 BROWN FAT ANTERIOR DORSUM WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Brown Adipose Tissue	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 CEREBELLUM WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Cerebellum	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 EPIDIDYMAL ADIPOSE WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	White Adipose Tissue	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 HEART WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Heart	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 HYPOTHALAMUS WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Hypothalamus	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 KIDNEY WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Kidney	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 LIVER WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Liver	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 LUNG WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Lung	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 MUSCLE GASTROCNEMIUS WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Skeletal Muscle	Control	Control	18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64	Publication
MOUSE ZHANG 2014 PITUITARY WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Glands	Control	Control	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48	Publication
MOUSE ZUBER 2009 CORTICAL COLLECTING DUCT WT: Circadian rhythms in the distal nephron segments, i.e., distal convoluted tubule (DCT) and connecting tubule (CNT) and the cortical collecting duct (CCD)	Mus musculus	Kidney	Control	Control	0, 4, 8, 12, 16, 20	Publication
MOUSE ZUBER 2009 DISTAL CONVOLUTED TUBULE WT: Circadian rhythms in the distal nephron segments, i.e., distal convoluted tubule (DCT) and connecting tubule (CNT) and the cortical collecting duct (CCD)	Mus musculus	Kidney	Control	Control	0, 4, 8, 12, 16, 20	Publication
NEUROSPORA ANANTHASUBRAMANIAM 2018 CRASSA DMSN1: Sampling of liquid culture grown N. crassa every 2h over 22h from light to dark transition.	Neurospora crassa	Fungus	Dmsn1 Mutant	Mutation	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
NEUROSPORA ANANTHASUBRAMANIAM 2018 CRASSA WT: Sampling of liquid culture grown N. crassa every 2h over 22h from light to dark transition.	Neurospora crassa	Fungus	Control	Mutation	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22	Publication
NEUROSPORA GCN2 SIGNALING PATHWAY KO: GCN2 signaling pathway in circadian clock function by regulating histone acetylation under amino acid starvation.	Neurospora crassa	Fungus	Metabolic-Sensing Knockout	Knockout	0, 12	Publication
NEUROSPORA GCN2 SIGNALING PATHWAY WT: GCN2 signaling pathway in circadian clock function by regulating histone acetylation under amino acid starvation.	Neurospora crassa	Fungus	Control	Knockout	0, 12	Publication
NEUROSPORA RIBOSOME CLOCK WT: Circadian RNA-seq profiling of wild-type Neurospora, revealing rhythmic expression of ribosomal protein mRNAs.	Neurospora crassa	Mycelia	Control	Control	12, 16, 20, 24, 28, 32, 36, 40, 44, 48	Publication
RAT ALMON 2008 LIVER WT: Global gene expression analysis in the identification of circadian-regulated genes involved in drug action.	Rattus norvegicus	Liver	Control	Control	1, 2, 4, 6, 8, 10, 11, 12, 13, 14, 16, 18, 20, 22, 23, 24	Publication
RAT MICROGLIA TIMED FEEDING DIET COMPARISON CHOW ADLIB: Microglial transcriptomes of diet-induced obese rats on high-fat or chow diets fed ad libitum, during the dark phase, or during the light phase.	Rattus norvegicus	Hypothalamus	Normal Chow, Ad Libitum	Diet	2, 6, 10, 14, 18, 22	Publication
RAT MICROGLIA TIMED FEEDING DIET COMPARISON CHOW DARK-FEED: Microglial transcriptomes of diet-induced obese rats on high-fat or chow diets fed ad libitum, during the dark phase, or during the light phase.	Rattus norvegicus	Hypothalamus	Normal Chow, Dark-Phase Feeding	Diet	2, 6, 10, 14, 18, 22	Publication
RAT MICROGLIA TIMED FEEDING DIET COMPARISON CHOW LIGHT-FEED: Microglial transcriptomes of diet-induced obese rats on high-fat or chow diets fed ad libitum, during the dark phase, or during the light phase.	Rattus norvegicus	Hypothalamus	Normal Chow, Light-Phase Feeding	Diet	2, 6, 10, 14, 18, 22	Publication
RAT MICROGLIA TIMED FEEDING DIET COMPARISON HFD ADLIB: Microglial transcriptomes of diet-induced obese rats on high-fat or chow diets fed ad libitum, during the dark phase, or during the light phase.	Rattus norvegicus	Hypothalamus	High-Fat Diet, Ad Libitum	Diet	2, 6, 10, 14, 18, 22	Publication
RAT MICROGLIA TIMED FEEDING DIET COMPARISON HFD DARK-FEED: Microglial transcriptomes of diet-induced obese rats on high-fat or chow diets fed ad libitum, during the dark phase, or during the light phase.	Rattus norvegicus	Hypothalamus	High-Fat Diet, Dark-Phase Feeding	Diet	2, 6, 10, 14, 18, 22	Publication
RAT MICROGLIA TIMED FEEDING DIET COMPARISON HFD LIGHT-FEED: Microglial transcriptomes of diet-induced obese rats on high-fat or chow diets fed ad libitum, during the dark phase, or during the light phase.	Rattus norvegicus	Hypothalamus	High-Fat Diet, Light-Phase Feeding	Diet	2, 6, 10, 14, 18, 22	Publication
RAT SLEEP AND BRAIN DISORDERS SLEEP-DEPRIVED: Sleep deprivation in Long Evans rats were subjects being sleep deprived for 6 hours and then samples being collected every 2h during the recovery.	Rattus norvegicus	Central Forebrain	Acute Sleep Deprivation	Sleep	0, 2, 4, 8	Publication
RAT SLEEP AND BRAIN DISORDERS WT: Sleep deprivation in Long Evans rats were subjects being sleep deprived for 6 hours and then samples being collected every 2h during the recovery.	Rattus norvegicus	Central Forebrain	Sleep Recovery	Sleep	0, 2, 4, 8	Publication
RAT STAEHLE 2020 BRAIN CEA: Baseline time-of-day gene expression study of rat brain regions, including CeA (central nucleus of the amygdala) and DVC (dorsal vagal complex)	Rattus norvegicus	Central Nucleus of the Amygdala	Control	Control	3, 5, 9	Publication
RAT STAEHLE 2020 BRAIN DVC: Baseline time-of-day gene expression study of rat brain regions, including CeA (central nucleus of the amygdala) and DVC (dorsal vagal complex)	Rattus norvegicus	Dorsal Vagal Complex	Control	Control	3, 5, 9	Publication
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adrenal Gland	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adrenal Gland	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adrenal Gland	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adrenal Gland	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Brown Adipose Tissue	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Brown Adipose Tissue	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Brown Adipose Tissue	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Brown Adipose Tissue	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus Tendon	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus Tendon	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus Tendon	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Extensor Digitorum Longus Tendon	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS TENDON FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius Tendon	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS TENDON FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius Tendon	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS TENDON MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius Tendon	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS TENDON MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Gastrocnemius Tendon	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY HEART FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY HEART FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY HEART MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY HEART MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY KIDNEY FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY KIDNEY FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY KIDNEY MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY KIDNEY MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LIVER FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LIVER FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LIVER MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LIVER MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LUNG FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LUNG FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LUNG MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY LUNG MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY OVARY FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Ovary	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY OVARY FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Ovary	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY PITUITARY FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Pituitary	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY PITUITARY FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Pituitary	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY PITUITARY MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Pituitary	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY PITUITARY MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Pituitary	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY QUADRICEPS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Quadriceps	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY QUADRICEPS FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Quadriceps	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY QUADRICEPS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Quadriceps	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY QUADRICEPS MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Quadriceps	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SOLEUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Soleus	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SOLEUS FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Soleus	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SOLEUS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Soleus	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SOLEUS MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Soleus	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SPLEEN FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SPLEEN FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SPLEEN MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY SPLEEN MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TESTIS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Testis	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TESTIS MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Testis	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior Tendon	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior Tendon	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior Tendon	Male, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON MALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Tibialis Anterior Tendon	Male, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY UTERUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Uterus	Female, Energy Deficient	Sex, Energy-Status	5, 17	Publication
RELATIVE ENERGY DEFICIENCY UTERUS FEMALE SUFFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Uterus	Female, Energy Sufficient	Sex, Energy-Status	5, 17	Publication
RIJOFERREIRA ANOPHELES SALIVARY GLAND DD: Anopheles stephensi salivary glands collected in light-dark and constant-darkness conditions to profile daily oscillations in gland gene expression.	Anopheles stephensi	Salivary Gland	Constant Darkness	Light-Dark	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68, 72	Publication
RIJOFERREIRA ANOPHELES SALIVARY GLAND LD: Anopheles stephensi salivary glands collected in light-dark and constant-darkness conditions to profile daily oscillations in gland gene expression.	Anopheles stephensi	Salivary Gland	Control	Light-Dark	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68, 72	Publication
RIJOFERREIRA PLASMODIUM SPOROZOITE DD: Plasmodium berghei sporozoites isolated from mosquito salivary glands under light-dark and constant-darkness conditions to assess daily rhythms in parasite gene expression.	Plasmodium berghei	Parasite	Constant Darkness	Light-Dark	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68, 72	Publication
RIJOFERREIRA PLASMODIUM SPOROZOITE LD: Plasmodium berghei sporozoites isolated from mosquito salivary glands under light-dark and constant-darkness conditions to assess daily rhythms in parasite gene expression.	Plasmodium berghei	Parasite	Control	Light-Dark	0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68, 72	Publication
SHEEP RUMEN VFA DIET GRAIN: Circadian RNA-seq study of sheep rumen epithelial cells treated with grain-derived or hay-derived volatile fatty acid mixtures (VFA) across six time points.	Ovis aries	Rumen Epithelium Cells	Grain-Derived Volatile Fatty Acid Treatment	Diet	0, 4, 8, 12, 16, 20	Publication
SHEEP RUMEN VFA DIET HAY: Circadian RNA-seq study of sheep rumen epithelial cells treated with grain-derived or hay-derived volatile fatty acid mixtures (VFA) across six time points.	Ovis aries	Rumen Epithelium Cells	Hay-Derived Volatile Fatty Acid Treatment	Diet	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING FOREBRAIN SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Forebrain	Sleep Deprivation	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING FOREBRAIN WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Forebrain	Control	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING IN CEREBELLUM SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Cerebellum	Sleep Deprivation	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING IN CEREBELLUM WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Cerebellum	Control	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING IN KIDNEY SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Kidney	Sleep Deprivation	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING IN KIDNEY WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Kidney	Control	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING IN LIVER SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Liver	Sleep Deprivation	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION AND AGING IN LIVER WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Liver	Control	Sleep	0, 4, 8, 12, 16, 20	Publication
SLEEP DISRUPTION LUNG TUMORIGENESIS SLEEP-DEPRIVED: Circadian gene expression in KRAS-driven lung tumors under chronic sleep deficiency vs normal sleep.	Mus musculus	Lung Tumor	Sleep Deprivation, Lung Cancer	Sleep, Cancer	0, 4, 8, 12, 16, 20, 24	Publication
SLEEP DISRUPTION LUNG TUMORIGENESIS WT: Circadian gene expression in KRAS-driven lung tumors under chronic sleep deficiency vs normal sleep.	Mus musculus	Lung Tumor	Lung Cancer	Sleep, Cancer	0, 4, 8, 12, 16, 20, 24	Publication
TANWEE CIRCADIAN AEDES BRAIN: Circadian analysis of mosquito brain and peripheral olfactory tissues to characterize daily rhythmic gene expression linked to odor detection and neural activity.	Aedes aegypti	Whole Brain	Control	Control	6, 12, 18, 24	Publication
TANWEE CIRCADIAN AEDES OLFACTORY: Circadian analysis of mosquito brain and peripheral olfactory tissues to characterize daily rhythmic gene expression linked to odor detection and neural activity.	Aedes aegypti	Peripheral Olfactory	Control	Control	6, 12, 18, 24	Publication
TANWEE CIRCADIAN ANOPHELES BRAIN: Circadian analysis of mosquito brain and peripheral olfactory tissues to characterize daily rhythmic gene expression linked to odor detection and neural activity.	Anopheles culicifacies	Whole Brain	Control	Control	6, 12, 18, 24	Publication
TANWEE CIRCADIAN ANOPHELES OLFACTORY: Circadian analysis of mosquito brain and peripheral olfactory tissues to characterize daily rhythmic gene expression linked to odor detection and neural activity.	Anopheles culicifacies	Peripheral Olfactory	Control	Control	6, 12, 18, 24	Publication
TEMPERATURE CHANGE AND CIRC RHYTHM 18C HIGH-CALORIE: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	High-Calorie Diet, 18C	Diet, Temperature	2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24	Publication
TEMPERATURE CHANGE AND CIRC RHYTHM 18C LOW-CALORIE: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	Low-Calorie Diet, 18C	Diet, Temperature	2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24	Publication
TEMPERATURE CHANGE AND CIRC RHYTHM 25C HIGH-CALORIE: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	High-Calorie Diet, 25C	Diet, Temperature	2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24	Publication
TEMPERATURE CHANGE AND CIRC RHYTHM 5 DAY 18C: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	18C	Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 20, 22, 24, 26, 28, 30, 32, 34, 36, 78, 80, 82, 84, 86, 88, 90, 92, 94, 96, 98, 100, 102, 104, 106, 108, 110, 112, 114	Publication
TEMPERATURE CHANGE AND CIRC RHYTHM 5 DAY 25C: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	25C	Temperature	0, 2, 4, 6, 8, 10, 12, 14, 16, 20, 22, 24, 26, 28, 30, 32, 34, 36, 78, 80, 82, 84, 86, 88, 90, 92, 94, 96, 98, 100, 102, 104, 106, 108, 110, 112, 114	Publication
VISION AND CIRCADIAN BIOLOGY CHOROIDAL MYOPIC: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Choroid	Myopia	Disease	0, 4, 8, 12, 16, 20	Publication
VISION AND CIRCADIAN BIOLOGY CHOROIDAL WT: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Choroid	Control	Disease	0, 4, 8, 12, 16, 20	Publication
VISION AND CIRCADIAN BIOLOGY RETINAL MYOPIC: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Retina	Myopia	Disease	0, 4, 8, 12, 16, 20	Publication
VISION AND CIRCADIAN BIOLOGY RETINAL WT: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Retina	Control	Disease	0, 4, 8, 12, 16, 20	Publication
ZEBRAFISH SIFUENTES 2016 INJURY: Transcriptional profiles of 0, 8, and 16 hour post-lesion zebrafish Muller glia (in triplicate) were generated by high-throughput sequencing in an Illumina GAIIx	Danio rerio	Retina	Retinal Lesion	Injury	0, 8, 16	Publication
ZEBRAFISH TOVIN 2012 KO: Circadian pineal gland gene expression study in aanat2:EGFP transgenic reporter zebrafish collected under constant darkness.	Danio rerio	Pineal Gland	Constant Darkness	Light-Dark	2, 6, 10, 14, 18, 22	Publication

Dataset Description	Species	Tissue	Condition	Experiment Type	Timepoints	Study
HUMAN KRISHNAIAH 2017 U2 OS OSTEOSARCOMA: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Homo sapiens	Cells	Control	Control	0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48	Publication
MOUSE ABBONDANTE 2016 SERUM HIGH-FAT: Comparative circadian metabolomic analysis of mouse serum and liver under normal chow and high fat diet.	Mus musculus	Serum	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20, 24	Publication
MOUSE ABBONDANTE 2016 SERUM WT: Comparative circadian metabolomic analysis of mouse serum and liver under normal chow and high fat diet.	Mus musculus	Serum	Normal Chow	Diet	0, 4, 8, 12, 16, 20, 24	Publication
MOUSE DOPAMINE LIVER 2018 COCAINE: Liver treated with cocaine or saline for a D2R KO vs WT experiment.	Mus musculus	Liver	Cocaine Exposure	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	None
MOUSE DOPAMINE LIVER 2018 COCAINE-D2R-KO: Liver treated with cocaine or saline for a D2R KO vs WT experiment.	Mus musculus	Liver	Cocaine Exposure, Dopamine Signaling Knockout	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	None
MOUSE DOPAMINE LIVER 2018 SALINE: Liver treated with cocaine or saline for a D2R KO vs WT experiment.	Mus musculus	Liver	Saline Vehicle Control	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	None
MOUSE DOPAMINE LIVER 2018 SALINE-DR2-KO: Liver treated with cocaine or saline for a D2R KO vs WT experiment.	Mus musculus	Liver	Saline Vehicle Control, Dopamine Signaling Knockout	Drug-Treatment, Knockout	3, 7, 11, 15, 19, 23	None
MOUSE DOPAMINE SCN 2018 COCAINE: Brain metabolome of cocaine treated SCN in a WT vs D2R KO comparison	Mus musculus	Suprachiasmatic Nucleus	Cocaine Exposure	Drug-Treatment, Knockout	3, 7	None
MOUSE DOPAMINE SCN 2018 COCAINE-D2R-KO: Brain metabolome of cocaine treated SCN in a WT vs D2R KO comparison	Mus musculus	Suprachiasmatic Nucleus	Cocaine Exposure, Dopamine Signaling Knockout	Drug-Treatment, Knockout	3, 7	None
MOUSE DOPAMINE SCN 2018 SALINE: Brain metabolome of saline treated SCN in a WT vs D2R KO comparison	Mus musculus	Suprachiasmatic Nucleus	Saline Vehicle Control	Drug-Treatment, Knockout	3, 7	None
MOUSE DOPAMINE SCN 2018 SALINE-DR2-KO: Brain metabolome of saline treated SCN in a WT vs D2R KO comparison	Mus musculus	Suprachiasmatic Nucleus	Saline Vehicle Control, Dopamine Signaling Knockout	Drug-Treatment, Knockout	3, 7	None
MOUSE DYAR 2018 BROWN ADIPOSE HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Brown Adipose Tissue	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20, 24	None
MOUSE DYAR 2018 BROWN ADIPOSE NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Brown Adipose Tissue	Normal Chow	Diet	0, 4, 8, 12, 16, 20, 24	None
MOUSE DYAR 2018 MUSCLE HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and seru.	Mus musculus	Muscle	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	None
MOUSE DYAR 2018 MUSCLE NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and seru.	Mus musculus	Muscle	Normal Chow	Diet	0, 4, 8, 12, 16, 20	None
MOUSE DYAR 2018 SPERM HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Sperm	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	None
MOUSE DYAR 2018 SPERM NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Sperm	Normal Chow	Diet	0, 4, 8, 12, 16, 20	None
MOUSE DYAR 2018 WHITE ADIPOSE HIGH-FAT: Circadian analysis of white adipose tissue under Normal-Chow and High-Fat conditions	Mus musculus	White Adipose Tissue	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20, 24	None
MOUSE DYAR 2018 WHITE ADIPOSE NORMAL-CHOW: Circadian analysis of white adipose tissue under Normal-Chow and High-Fat conditions	Mus musculus	White Adipose Tissue	Normal Chow	Diet	0, 4, 8, 12, 16, 20, 24	None
MOUSE ECKEL MAHAN 2011 LIVER CLOCK-KO: Liver metabolome of a Clock-KO experiment	Mus musculus	Liver	Core Clock Knockout	Knockout	3, 9, 15, 21	Publication
MOUSE ECKEL MAHAN 2011 LIVER WT: Liver metabolome of a Clock-KO experiment	Mus musculus	Liver	Control	Knockout	3, 9, 15, 21	Publication
MOUSE ECKEL-MAHAN 2013 LIVER METABOLOME HIGH-FAT: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20, 24	Publication
MOUSE ECKEL-MAHAN 2013 LIVER METABOLOME NORMAL-CHOW: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	Normal Chow	Diet	0, 4, 8, 12, 16, 20, 24	Publication
MOUSE EXERCISE HEPATOCYTE METABOLOME EVENING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening Exercise	Exercise	0, 4, 8, 12, 16, 20	None
MOUSE EXERCISE HEPATOCYTE METABOLOME EVENING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening Sedentary	Exercise	0, 4, 8, 12, 16, 20	None
MOUSE EXERCISE HEPATOCYTE METABOLOME MORNING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning Exercise	Exercise	0, 4, 8, 12, 16, 20	None
MOUSE EXERCISE HEPATOCYTE METABOLOME MORNING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning Sedentary	Exercise	0, 4, 8, 12, 16, 20	None
MOUSE EXERCISE METABOLOME EVENING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening Exercise	Exercise	4, 8, 12, 16, 20, 24	None
MOUSE EXERCISE METABOLOME EVENING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening Sedentary	Exercise	4, 8, 12, 16, 20, 24	None
MOUSE EXERCISE METABOLOME MORNING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning Exercise	Exercise	4, 8, 12, 16, 20, 24	None
MOUSE EXERCISE METABOLOME MORNING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning Sedentary	Exercise	4, 8, 12, 16, 20, 24	None
MOUSE KRISHNAIAH 2017 BMAL1-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Knockdown	Genetic Perturbation	0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47	Publication
MOUSE KRISHNAIAH 2017 CRY1-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Knockdown	Genetic Perturbation	0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47	Publication
MOUSE KRISHNAIAH 2017 CRY2-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Knockdown	Genetic Perturbation	0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47	Publication
MOUSE KRISHNAIAH 2017 WT: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Control	Genetic Perturbation	0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47	Publication
MOUSE KRISHNAIAH HEPATOCYTE 2017 WT: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Control	Control	0, 4, 8, 12, 16, 20, 24	Publication
MOUSE MASRI 2014 LIVER METABOLOME SIRT1-KO: Circadian liver metabolomics study comparing wild-type, Sirt1 knockout, and Sirt6 knockout mice.	Mus musculus	Liver	Metabolic Regulation Knockout	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE MASRI 2014 LIVER METABOLOME SIRT1-WT: Circadian liver metabolomics study comparing wild-type, Sirt1 knockout, and Sirt6 knockout mice.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE MASRI 2014 LIVER METABOLOME SIRT6-KO: Circadian liver metabolomics study comparing wild-type, Sirt1 knockout, and Sirt6 knockout mice.	Mus musculus	Liver	Metabolic Regulation Knockout	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE MASRI 2014 LIVER METABOLOME SIRT6-WT: Circadian liver metabolomics study comparing wild-type, Sirt1 knockout, and Sirt6 knockout mice.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	Publication
MOUSE MASRI 2016 LIVER METABOLOME LUNG-WT: Circadian liver gene expression study comparing control and lung tumor-bearing mice to examine the distal effects of lung cancer on the hepatic circadian clock.	Mus musculus	Liver	Control	Cancer	0, 4, 8, 12, 16, 20	None
MOUSE MASRI 2016 LIVER METABOLOME TUMOR-BEARING-LUNG: Circadian liver gene expression study comparing control and lung tumor-bearing mice to examine the distal effects of lung cancer on the hepatic circadian clock.	Mus musculus	Liver	Lung Cancer	Cancer	0, 4, 8, 12, 16, 20	None
MOUSE MUSCLE 2018 KO: Mouse with clock Knockout condition	Mus musculus	Muscle	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE MUSCLE 2018 WT: Mouse with clock Knockout condition	Mus musculus	Muscle	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS METABOLOME BRAIN RE: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Suprachiasmatic Nucleus	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS METABOLOME LIVER KO: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS METABOLOME LIVER RE: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Liver	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS METABOLOME LIVER WT: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS MUSCLE RE MUSCLE RE: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Muscle	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS NF KO: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PETRUS NF WT: Mouse metabolomics study comparing wild-type, core clock knockout, and tissue-specific rescue conditions across liver, muscle, and SCN samples.	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE PREFRONTAL CORTEX 2018 HIGH-FAT: Brain PFC metabolome in a high-fat diet experiment	Mus musculus	Prefrontal Cortex	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	None
MOUSE PREFRONTAL CORTEX 2018 NORMAL-CHOW: Brain PFC metabolome in a high-fat diet experiment	Mus musculus	Prefrontal Cortex	Normal Chow	Diet	0, 4, 8, 12, 16, 20	None
MOUSE SASSONE METABOLOME LIVER KO: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE SASSONE METABOLOME LIVER RE: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Rescue	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE SASSONE METABOLOME LIVER WT: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Control	Knockout	0, 4, 8, 12, 16, 20	None
MOUSE SCN 2018 HIGH-FAT: Brain metabolome in a high fat diet experiment	Mus musculus	Suprachiasmatic Nucleus	High-Fat Diet	Diet	0, 4, 8, 12, 16, 20	None
MOUSE SCN 2018 NORMAL-CHOW: Brain metabolome in a high fat diet experiment	Mus musculus	Suprachiasmatic Nucleus	Normal Chow	Diet	0, 4, 8, 12, 16, 20	None

Dataset Description	Species	Tissue	Condition	Experiment Type	Timepoints	Study
MOUSE MASRI 2013 LIVER CLOCK-KO: Liver acetylome in a high fat diet experiment	Mus musculus	Liver	Core Clock Knockout	Knockout	3, 9, 15, 21	Publication
MOUSE MASRI 2013 LIVER WT: Liver acetylome in a high fat diet experiment	Mus musculus	Liver	Control	Knockout	3, 9, 15, 21	Publication
MOUSE MAUVOISIN 2017 LIVER BMAL-KO: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 6, 12, 18	Publication
MOUSE MAUVOISIN 2017 LIVER BMAL-KO-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 6, 12, 18	Publication
MOUSE MAUVOISIN 2017 LIVER CRY-KO: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 6, 12, 18	Publication
MOUSE MAUVOISIN 2017 LIVER CRY-KO-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 6, 12, 18	Publication
MOUSE MAUVOISIN 2017 LIVER WT: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Control	Knockout	0, 6, 12, 18	Publication
MOUSE MAUVOISIN 2017 LIVER WT-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Control	Knockout	0, 6, 12, 18	Publication

Dataset Description	Species	Tissue	Condition	Experiment Type	Timepoints	Study
HUMAN PLASMA NIGHT SHIFT MISALIGNED: 24 hour plasma proteome profiles from human subjects under misaligned (simulated night shift) sleep/feeding schedules.	Homo sapiens	Blood	Circadian Misalignment	Sleep, Diet	1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 22, 23	Publication
MOUSE KONRAD 2017 VENTRAL HIPPOCAMPUS PROTEOME TEMPORAL-LOBE-EPILEPTIC: Mouse hippocampus proteome study comparing control and temporal lobe epilepsy conditions to examine disease-related changes in daily protein rhythms.	Mus musculus	Hippocampus	Epilepsy	Disease	1, 3, 7, 11, 15, 19, 23	Publication
MOUSE KONRAD 2017 VENTRAL HIPPOCAMPUS PROTEOME WT: Mouse hippocampus proteome study comparing control and temporal lobe epilepsy conditions to examine disease-related changes in daily protein rhythms.	Mus musculus	Hippocampus	Control	Disease	1, 3, 7, 11, 15, 19, 23	Publication
MOUSE LIVER 2018 WT: Proteome circadian analysis of mouse liver in control condition.	Mus musculus	Liver	Control	Control	0, 4, 8, 12, 16, 20	None
MOUSE LIVER MAUVOISIN CRY KO: Circadian liver proteome profiling (in vivo SILAC) in wild-type vs Cry1/Cry2 double-Knockout mice under rhythmic feeding.	Mus musculus	Liver	Core Clock Knockout	Knockout		Publication
MOUSE LIVER MAUVOISIN CRY WT: Circadian liver proteome profiling (in vivo SILAC) in wild-type vs Cry1/Cry2 double-Knockout mice under rhythmic feeding.	Mus musculus	Liver	Control	Knockout		Publication
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME BMAL++: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Control	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME BMALKO: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME CRYKO: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME WT: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Control	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PROTEOME BMAL++: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PROTEOME BMALKO: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Control	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PROTEOME CRYKO: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Core Clock Knockout	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER NUCLEAR PROTEOME WT: Time-series nuclear proteomics and phosphoproteomics study of mouse liver comparing WT controls with Bmal1 and Cry1/Cry2 KO mice	Mus musculus	Liver	Control	Knockout	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE LIVER ROBLES 2014 WT: Identification of global circadian oscillations of the proteome in the mouse liver by applying in vivo SILAC mouse technology in combination with state of the art mass spectrometry.	Mus musculus	Liver	Control	Control	0, 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45	Publication
MOUSE MENDOZA 2017 SUPRACHIASMATIC NUCLEUS MIR132-KO: SCN neurons from miR-132/212-deficient mice.	Mus musculus	Suprachiasmatic Nucleus	miRNA Regulation Knockout	Knockout	3, 9, 12, 21	Publication
MOUSE MENDOZA 2017 SUPRACHIASMATIC NUCLEUS WT: SCN neurons from miR-132/212-deficient mice.	Mus musculus	Suprachiasmatic Nucleus	Control	Knockout	3, 9, 12, 21	Publication