CircadiOmics

Dataset Description	Species	Tissue Class	Condition	GEO Accession	Experiment Type	Timepoints	Link
AGE DEPENDENT CIRCADIAN CHANGES ADRENAL AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age groups	Mus musculus	Glands	Aged	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES ADRENAL OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age groups	Mus musculus	Glands	Old	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES ADRENAL YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age groups	Mus musculus	Glands	Young	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES HEART AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Heart	Aged	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES HEART OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Heart	Old	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES HEART YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Heart	Young	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES HYPOTHALAMUS AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Brain	Aged	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES HYPOTHALAMUS OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Brain	Old	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES HYPOTHALAMUS YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Brain	Young	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES KIDNEY AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Kidney	Aged	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES KIDNEY OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Kidney	Old	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES KIDNEY YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Kidney	Young	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES LUNG AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Lung	Aged	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES LUNG OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Lung	Old	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES LUNG YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Lung	Young	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES MUSCLE AGED: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Muscle	Aged	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES MUSCLE OLD: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Muscle	Old	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGE DEPENDENT CIRCADIAN CHANGES MUSCLE YOUNG: Defining age-dependent changes at the systems level, profiling the circadian transcriptome in the hypothalamus, lung, heart, kidney, skeletal muscle, and adrenal gland in 3 age group	Mus musculus	Muscle	Young	GSE201207	Age	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
AGING EPIDERMAL ADULT CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, adult animals	Mus musculus	Skin	Control-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL ADULT RESTRICTED-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, adult animals	Mus musculus	Skin	Restricted-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL AGED AGED: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, aged animals	Mus musculus	Skin	Aged	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL AGED YOUNG: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, aged animals	Mus musculus	Skin	Young	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL NORMAL CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals	Mus musculus	Skin	Control-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL NORMAL HIGH-FAT-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals	Mus musculus	Skin	High-Fat-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL NORMAL ND-CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals	Mus musculus	Skin	Nd-Control-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING EPIDERMAL NORMAL RESTRICTED-DIET: Adult stem cells undergo circadian reprogramming during ageing, epidermal stem cells, control animals	Mus musculus	Skin	Restricted-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING SATELLITE ADULT CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, adult animals	Mus musculus	Skin	Control-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING SATELLITE ADULT RESTRICTED-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, adult animals	Mus musculus	Skin	Restricted-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING SATELLITE AGED CONTROL-DIET: Aged stem cells undergo circadian reprogramming during ageing, satellite stem cells, aged animals	Mus musculus	Skin	Control-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING SATELLITE AGED RESTRICTED-DIET: Aged stem cells undergo circadian reprogramming during ageing, satellite stem cells, aged animals	Mus musculus	Skin	Restricted-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING SATELLITE NORMAL CONTROL-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, control animals	Mus musculus	Skin	Control-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
AGING SATELLITE NORMAL HIGH-FAT-DIET: Adult stem cells undergo circadian reprogramming during ageing, satellite stem cells, control animals	Mus musculus	Skin	High-Fat-Diet	GSE84580	Diet, Control	12, 20, 16, 0, 4, 8	Link
ARABIDOPSIS EXTENDED PHOTOPERIOD FLOWERING CONTROL: An extended 22-h photoperiod shifts circadian phase in seedlings and predicts flowering synchrony across recombinant inbred lines, mapping QTLs for photoperiod 'memory'.	Arabidopsis thaliana	Seedling	Control	GSE286355	Light-Dark	56, 54, 42, 50, 61, 62, 63, 64, 49, 66, 68, 69, 52, 24, 25, 26, 27, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 6, 9, 78, 39, 77, 76, 38, 73, 71, 59, 58, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 51, 36, 35, 34, 55, 74, 48, 57, 65	Link
ARABIDOPSIS EXTENDED PHOTOPERIOD FLOWERING EXTENDEDDAY: An extended 22-h photoperiod shifts circadian phase in seedlings and predicts flowering synchrony across recombinant inbred lines, mapping QTLs for photoperiod 'memory'.	Arabidopsis thaliana	Seedling	Extendedday	GSE286355	Light-Dark	56, 54, 42, 50, 61, 62, 63, 64, 49, 66, 68, 69, 52, 24, 25, 26, 27, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 6, 9, 78, 39, 77, 76, 38, 73, 71, 59, 58, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 51, 36, 35, 34, 55, 74, 48, 57, 65	Link
ARABIDOPSIS PLANT EDWARDS 2007 WT: Study the circadian expression of genes to model the Arabidopsis circadian clock	Arabidopsis thaliana	Plant	Wild-Type	GSE5612	Control	26, 38, 58, 46, 54, 30, 42, 50, 34, 62, 74, 66, 70	Link
BABOON ADRENAL CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Glands	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON ADRENAL MEDULLA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Glands	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON AMYGDALA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON ANTRUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON AORTA ENDOTHELIUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Heart	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON ARCUATE NUCLEUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON ASCENDING COLON MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON AXILLARY LYMPHONODES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON BLADDER MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Bladder	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON BONE MARROW MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Bone	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON CECUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON CEREBELLUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON CORNEA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Eye	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON DESCENDING COLON MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON DORSOMEDIAL HYPOTHALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON DUODENUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON HABENULA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON HEART MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Heart	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON HIPPOCAMPUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON ILEUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON IRIS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Eye	Wild-Type	GSE98965	Control	10, 12, 20, 14, 16, 18, 0, 2, 4, 6, 8	Link
BABOON KIDNEY CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Kidney	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON KIDNEY MEDULLA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Kidney	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON LATERAL GLOBUS PALLIDUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON LATERAL HYPOTHALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON LIVER MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Liver	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON LUNG MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Lung	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON MAMMILARY BODIES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON MEDIAL GLOBUS PALLIDUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON MESENTERIC LYMPHONODES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Bone	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON MUSCLE ABDOMINAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Muscle	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON MUSCLE GASTROCNEMIAN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Muscle	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON OESOPHAGUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON OLFACTORY BULB MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON OMENTAL FAT MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adipose	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON OPTIC NERVE HEAD MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Eye	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PANCREAS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Glands	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PARAVENTRICULAR NUCLEI MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PINEAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Glands	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PITUITARY MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Glands	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PONS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PREFRONTAL CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PREOPTIC AREA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PROSTATE MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Reproductive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON PUTAMEN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON RETINA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Eye	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON RETINAL PIGMENT EPITHELIUM MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Eye	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON SKIN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Skin	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON SMOOTH MUSCLE MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Muscle	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON SPLEEN MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Spleen	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON STOMACH FUNDUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Digestive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON SUBSTANTIA NIGRA MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON SUPRACHIASMATIC NUCLEI MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON SUPRAOPTIC NUCLEUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON TESTICLES MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Reproductive	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON THALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON THYROID MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Glands	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON VENTRO MEDIAL HYPOTHALAMUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON VISUAL CORTEX MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Brain	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON WHITE ADIPOSE MESENTERIC MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adipose	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON WHITE ADIPOSE PERICARDIAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adipose	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON WHITE ADIPOSE PERIRENAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adipose	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON WHITE ADIPOSE RETROPERITONEAL MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adipose	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
BABOON WHITE ADIPOSE SUBCUTANEOUS MURE 2018 WT: Diurnal transcriptome of 64 tissues sampled every 2 hours over 24 hours.	Papio anubis	Adipose	Wild-Type	GSE98965	Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
C. ELEGANS 2024 NHR-23 KO: C. elegans were cultivated under temperature cycles. Then, depleted NHR-23, and sampled worms under constant(CC) condition every 2 h.	Caenorhabditis elegans	Whole Body	KO	GSE233891	Knock-Out	11, 13, 15, 21, 17, 23, 19, 1, 3, 5, 7, 9	Link
C.ELEGANS DEVELOPMENT ON FOOD WT: Synchronized L1 stage larvae were placed on food at 25C, and samples collected hourly over a 16 hr period that covered development from L3 to the young adult stage.	Caenorhabditis elegans	Whole Body	Wild-Type	GSE52910	Control	11, 10, 13, 12, 15, 14, 16, 1, 3, 2, 5, 4, 7, 6, 9, 8	Link
CANCER FOXP1 MUSCLE CACHEXIA KPC-FOXP1-KO: FoxP1 up-regulation in pancreatic-cancer cachexia (KPC: PDAC tumour-bearing mice; Sham: non-tumour controls) disrupts skeletal-muscle circadian transcription, whereas muscle-specific FoxP1 knockout preserves rhythmic genes and mitigates wasting.	Mus musculus	Muscle	Kpc-Foxp1-KO	GSE273878	Disease, Knock-Out	26, 38, 22, 18, 30, 34	Link
CANCER FOXP1 MUSCLE CACHEXIA KPC-WT: FoxP1 up-regulation in pancreatic-cancer cachexia (KPC: PDAC tumour-bearing mice; Sham: non-tumour controls) disrupts skeletal-muscle circadian transcription, whereas muscle-specific FoxP1 knockout preserves rhythmic genes and mitigates wasting.	Mus musculus	Muscle	Kpc-Wild-Type	GSE273878	Control	26, 38, 22, 18, 30, 34	Link
CDKL5 IMPACT IN HIPPOCAMPUS KO:	Mus musculus	Brain	KO		Control	12, 20, 16, 0, 4, 8	Link
CDKL5 IMPACT IN HIPPOCAMPUS WT:	Mus musculus	Brain	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
CDKL5 IMPACT IN SCN KO:	Mus musculus	Brain	KO		Control	12, 20, 16, 0, 4, 8	Link
CDKL5 IMPACT IN SCN WT:	Mus musculus	Brain	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
CHICKEN ERYTHROIDPROGENITORS DAMIOLA 2004 WT: Global gene expression profile of immature avian erythrocytic progenitor cells, comparing self-renewal vs differentiation states (SAGE analysis) to identify factors involved in the switch from progenitor self-renewal to differentiation.	Gallus gallus	Cells	Wild-Type	GSE2026	Control	56, 54, 42, 50, 60, 62, 64, 66, 68, 52, 24, 26, 20, 22, 46, 44, 48, 28, 40, 38, 72, 70, 58, 12, 14, 16, 18, 30, 36, 34, 32	Link
DROSOPHILA DPPIL4 CIRCADIAN CONTROL: RNAi knock-down of peptidyl-prolyl isomerase-like 4 lengthens free-running period and dampens PERIOD oscillations in fly clock neurons.	Drosophila melanogaster	Brain	Control	GSE292592	Knock-Down	8, 16	Link
DROSOPHILA DPPIL4 CIRCADIAN KO: RNAi knock-down of peptidyl-prolyl isomerase-like 4 lengthens free-running period and dampens PERIOD oscillations in fly clock neurons.	Drosophila melanogaster	Brain	KO	GSE292592	Knock-Down	8, 16	Link
DROSOPHILA KADENER 2015 CBTOE: Flies were entrained in LD (light: dark) condition for 3-4 days and harvested at six time points	Drosophila melanogaster	Liver	Cbtoe		Light-Dark	11, 15, 23, 19, 3, 7	Link
DROSOPHILA KADENER 2015 CBTOE-CONTROL: Flies were entrained in LD (light: dark) condition for 3-4 days and harvested at six time points	Drosophila melanogaster	Liver	Cbtoe-Control		Light-Dark	11, 15, 23, 19, 3, 7	Link
DROSOPHILA KADENER 2015 CBTRNAI: Flies were entrained in LD (light: dark) condition for 3-4 days and harvested at six time points	Drosophila melanogaster	Liver	Cbtrnai		Light-Dark	11, 15, 23, 19, 3, 7	Link
DROSOPHILA KADENER 2015 CBTRNAI-CONTROL: Flies were entrained in LD (light: dark) condition for 3-4 days and harvested at six time points	Drosophila melanogaster	Liver	Cbtrnai-Control		Light-Dark	11, 15, 23, 19, 3, 7	Link
DROSOPHILA TEMPERATURE KADENER 2019 18C: RNA seq from fly heads at 3 temperatures (18, 25, 29C) and circadian timepoints (zt3, zt7, zt11, zt15, zt18, zt23)	Drosophila melanogaster	Brain	18c		Temperature	11, 15, 23, 19, 3, 7	Link
DROSOPHILA TEMPERATURE KADENER 2019 25C: RNA seq from fly heads at 3 temperatures (18, 25, 29C) and circadian timepoints (zt3, zt7, zt11, zt15, zt18, zt23)	Drosophila melanogaster	Brain	25c		Temperature	11, 15, 23, 19, 3, 7	Link
DROSOPHILA TEMPERATURE KADENER 2019 29C: RNA seq from fly heads at 3 temperatures (18, 25, 29C) and circadian timepoints (zt3, zt7, zt11, zt15, zt18, zt23)	Drosophila melanogaster	Brain	29c		Temperature	11, 15, 23, 19, 3, 7	Link
DROSOPHILA TIM PROMOTER/ENHANCER TIM IN24: Effects of regulatory element deletions on circadian gene expression	Drosophila melanogaster	Brain	In24	GSE259245	Control	10, 14, 22, 18, 2, 6	Link
DROSOPHILA TIM PROMOTER/ENHANCER TIM UP10: Effects of regulatory element deletions on circadian gene expression	Drosophila melanogaster	Brain	Up10	GSE259245	Control	10, 14, 22, 18, 2, 6	Link
DROSOPHILA TIM PROMOTER/ENHANCER TIM UP122: Effects of regulatory element deletions on circadian gene expression	Drosophila melanogaster	Brain	Up122	GSE259245	Control	10, 14, 22, 18, 2, 6	Link
DROSOPHILA TIM PROMOTER/ENHANCER TIM UP126: Effects of regulatory element deletions on circadian gene expression	Drosophila melanogaster	Brain	Up126	GSE259245	Control	10, 14, 22, 18, 2, 6	Link
DROSOPHILA TIM PROMOTER/ENHANCER WT: Effects of regulatory element deletions on circadian gene expression	Drosophila melanogaster	Brain	Wild-Type	GSE259245	Control	10, 14, 22, 18, 2, 6	Link
EMBRYONIC HEART E10: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart	Mus musculus	Heart	E10		Control	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
EMBRYONIC HEART E17: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart	Mus musculus	Heart	E17		Control	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
EMBRYONIC HEART YOUNG: Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development, embryonic or young mouse heart	Mus musculus	Heart	Young		Control	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
ENERGY BALANCE DIURNAL NOCTURNAL ARCUATE NUCLEUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL ARCUATE NUCLEUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL BRAINSTEM HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL BRAINSTEM LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL BROWN ADIPOSE HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Arcuate nucleus	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL BROWN ADIPOSE LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Arcuate nucleus	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL CEREBELLUM HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL CEREBELLUM LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL CORTEX HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL CORTEX LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL DORSOMEDIAL HYPOTHALAMUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL DORSOMEDIAL HYPOTHALAMUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL HABENULA HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL HABENULA LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL HIPPOCAMPUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL HIPPOCAMPUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS CAUDAL HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS CAUDAL LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS ROSTRAL HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL LATERAL HYPOTHALAMUS ROSTRAL LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL LIVER HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Liver	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL LIVER LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Liver	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL OLFACTORY BULB HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL OLFACTORY BULB LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEI HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEI LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEUS THALAMUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PARAVENTRICULAR NUCLEUS THALAMUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PERIVENTRICULAR ZONE HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PERIVENTRICULAR ZONE LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PREFRONTAL CORTEX HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PREFRONTAL CORTEX LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PREOPTIC AREA HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL PREOPTIC AREA LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL QUADRICEPS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Muscle	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL QUADRICEPS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Muscle	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL SUPRACHIASMATIC NUCLEUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL SUPRACHIASMATIC NUCLEUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL TESTIS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Reproductive	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL TESTIS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Reproductive	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL VENTROMEDIAL HYPOTHALAMUS HIGH-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	High-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
ENERGY BALANCE DIURNAL NOCTURNAL VENTROMEDIAL HYPOTHALAMUS LOW-WORKLOAD: Regulating wheel-running activity with food rewards, Switching between nocturnality and diurnality, and revealing distinct rhythmic gene expression in various tissues and brain regions.	Mus musculus	Brain	Low-Workload	GSE228967	Exercise	13, 21, 17, 1, 5, 9	Link
GUT KO TOMOKI 2021 KO:	Mus musculus	Digestive	KO		Knock-Out	12, 20, 16, 0, 4, 8	Link
GUT KO TOMOKI 2021 WT:	Mus musculus	Digestive	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
GUT MICROBIOTA AFFECT IN DUODENUM MALE GERM-FREE: Rolee of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Digestive	Germ-Free	GSE114399	Microbiome	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN DUODENUM MALE WT: Rolee of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Digestive	Wild-Type	GSE114399	Control	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN ILEUM MALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Digestive	Germ-Free	GSE114399	Microbiome	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN ILEUM MALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Digestive	Wild-Type	GSE114399	Control	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN LIVER FEMALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Germ-Free	GSE114400	Microbiome	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN LIVER FEMALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Wild-Type	GSE114400	Control	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN LIVER MALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Germ-Free	GSE114400	Microbiome	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN LIVER MALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	Wild-Type	GSE114400	Control	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN MALE CRY KO: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Liver	KO	GSE114402	Knock-Out	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN WHITE ADIPOSE MALE GERM-FREE: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Adipose	Germ-Free	GSE114401	Microbiome	10, 14, 22, 18, 2, 6	Link
GUT MICROBIOTA AFFECT IN WHITE ADIPOSE MALE WT: Role of gut microbiota in daily rhythms of gene expression and physiology	Mus musculus	Adipose	Wild-Type	GSE114401	Control	10, 14, 22, 18, 2, 6	Link
GUT RE TOMOKI 2021 KO:	Mus musculus	Digestive	KO		Knock-Out	12, 20, 16, 0, 4, 8	Link
GUT RE TOMOKI 2021 RE:	Mus musculus	Digestive	Re		Knock-Out	12, 20, 16, 0, 4, 8	Link
GUT RE TOMOKI 2021 WT:	Mus musculus	Digestive	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
HUMAN BREAST GUTIERREZ 2016 CANCER: Gene expression analysis of cancerous breast cell lines determine the degree to which the circadian clock is damaged.	Homo sapiens	Cells	Cancer	GSE76370	Cancer	24, 12, 20, 16, 28, 0, 4, 8	Link
HUMAN FIBROBLAST LIU 2017 MYOGENIC-REPROGRAMMING: Human Fibroblast Reprogrammed to Myogenic Lineage via MyoD1	Homo sapiens	Cells	Myogenic-Reprogramming	GSE54652	Control	24, 16, 32, 40, 0, 8	Link
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA ASPC1: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Cells	Aspc1	GSE262627	Control	24, 12, 20, 16, 0, 4, 8	Link
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA CAPAN1: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Cells	Capan1	GSE262627	Control	24, 12, 20, 16, 0, 4, 8	Link
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA MIAPACA2: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Cells	Miapaca2	GSE262627	Control	24, 12, 20, 16, 0, 4, 8	Link
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA ORGANOID: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Organoid	Organoid	GSE262627	Control	24, 12, 20, 16, 0, 4, 8	Link
HUMAN PANCREATIC DUCTAL ADENOCARCINOMA PANC1: Explored the presence of the circadian transcriptome in PDA using patient-derived organoids (PDOs) and validated these findings by comparing PDA data from TCGA with non-cancerous healthy pancreas data from GTeX	Homo sapiens	Cells	Panc1	GSE262627	Control	24, 12, 20, 16, 0, 4, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-1: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-10: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-11: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-12: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-2: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-3: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-4: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-5: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-6: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-7: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-8: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN SERUM NA 2017 TBI-PATIENT-9: Patients with inconsistent chrono-types diagnosed with TBI	Homo sapiens	Blood	Traumatic Brain Injury		Disease	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
HUMAN U2 OS HUGHES 2009 OSTEOSARCOMA: Comparison of oscillating transcription from mouse liver, NIH3T3, and U2OS cells showing 12-hour oscillatory transcripts.	Homo sapiens	Cells	Osteosarcoma	GSE11923	Control	42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
HUMANIZED FU 2024 HCC HUMAN CJ-HCC: Human hepatocellular carcinoma (HCC) xenograft transcriptomes (from human hepatocytes) in chimeric mice under normal vs circadian-disrupted conditions, showing that chronic circadian disruption (CJ) shifts tumor gene expression toward more aggressive, poor-prognosis molecular profiles.	Homo sapiens	Tumor	Cj-Hcc	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 HCC HUMAN CONTROL-HCC: Human hepatocellular carcinoma (HCC) xenograft transcriptomes (from human hepatocytes) in chimeric mice under normal vs circadian-disrupted conditions, showing that chronic circadian disruption (CJ) shifts tumor gene expression toward more aggressive, poor-prognosis molecular profiles.	Homo sapiens	Tumor	Control-Hcc	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 HCC MOUSE CJ-HCC: Mouse stromal cell transcriptomes from liver tumors in humanized mice under normal vs circadian-disrupted conditions, indicating that circadian misalignment alters the host tumor microenvironment gene expression and immune/metabolic pathways in HCC.	Mus musculus	Tumor	Cj-Hcc	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 HCC MOUSE CONTROL-HCC: Mouse stromal cell transcriptomes from liver tumors in humanized mice under normal vs circadian-disrupted conditions, indicating that circadian misalignment alters the host tumor microenvironment gene expression and immune/metabolic pathways in HCC.	Mus musculus	Tumor	Control-Hcc	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 LIVER HUMAN CONTROL-LIVER: Human hepatocyte transcriptome in chimeric humanized mouse livers comparing control vs NASH diet conditions and circadian disruption (chronic jet lag), showing that circadian misalignment (CJ) reprograms rhythmic gene expression in NASH-affected human hepatocytes and exacerbates pro-tumorigenic transcriptomic profiles.	Homo sapiens	Liver	Control-Liver	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 LIVER HUMAN NASH-CJ-LIVER: Human hepatocyte transcriptome in chimeric humanized mouse livers comparing control vs NASH diet conditions and circadian disruption (chronic jet lag), showing that circadian misalignment (CJ) reprograms rhythmic gene expression in NASH-affected human hepatocytes and exacerbates pro-tumorigenic transcriptomic profiles.	Homo sapiens	Liver	Nash-Cj-Liver	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 LIVER HUMAN NASH-CONTROL-LIVER: Human hepatocyte transcriptome in chimeric humanized mouse livers comparing control vs NASH diet conditions and circadian disruption (chronic jet lag), showing that circadian misalignment (CJ) reprograms rhythmic gene expression in NASH-affected human hepatocytes and exacerbates pro-tumorigenic transcriptomic profiles.	Homo sapiens	Liver	Nash-Control-Liver	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 LIVER MOUSE CONTROL-LIVER: Mouse (host) liver transcriptome in humanized chimeric mice under energy-rich control vs NASH diet, with and without chronic circadian disruption (jet lag), indicating that host mouse gene expression also shifts with circadian misalignment and metabolic disease, paralleling changes in human hepatocyte rhythms.	Mus musculus	Liver	Control-Liver	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 LIVER MOUSE NASH-CJ-LIVER: Mouse (host) liver transcriptome in humanized chimeric mice under energy-rich control vs NASH diet, with and without chronic circadian disruption (jet lag), indicating that host mouse gene expression also shifts with circadian misalignment and metabolic disease, paralleling changes in human hepatocyte rhythms.	Mus musculus	Liver	Nash-Cj-Liver	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HUMANIZED FU 2024 LIVER MOUSE NASH-CONTROL-LIVER: Mouse (host) liver transcriptome in humanized chimeric mice under energy-rich control vs NASH diet, with and without chronic circadian disruption (jet lag), indicating that host mouse gene expression also shifts with circadian misalignment and metabolic disease, paralleling changes in human hepatocyte rhythms.	Mus musculus	Liver	Nash-Control-Liver	GSE205881	Light-Dark, Disease	10, 2, 18	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA CER HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Brain	Hypoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA CER NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Brain	Normoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA HEART HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Heart	Hypoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA HEART NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Heart	Normoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA KIDNEY HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Kidney	Hypoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA KIDNEY NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Kidney	Normoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LIVER HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Liver	Hypoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LIVER NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Liver	Normoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LUNG HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Lung	Hypoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA LUNG NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Lung	Normoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA MUSCLE HYPOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Muscle	Hypoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
HYPOXIA AND OBSTRUCTIVE SLEEP APNEA MUSCLE NORMOXIC: Effect of intermittent hypoxia on 24-hour expression in lung, heart, liver, kidney, muscle, and cerebellum.	Mus musculus	Muscle	Normoxic	GSE214530	Oxygen-Level	12, 15, 21, 18, 0, 3, 6, 9	Link
IL10 CIRCADIAN INFLUENZA IMMUNE FEMALE-AB: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection. Blocking IL-10 signalling (Ab groups) abolishes the usual time-of-day survival advantage and triggers exaggerated lung immune responses, independent of infection time.	Mus musculus	Lung	Female-Ab	GSE287759	Sex, Disease	11, 23	Link
IL10 CIRCADIAN INFLUENZA IMMUNE FEMALE-IGG: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection. Blocking IL-10 signalling (Ab groups) abolishes the usual time-of-day survival advantage and triggers exaggerated lung immune responses, independent of infection time.	Mus musculus	Lung	Female-Igg	GSE287759	Sex, Disease	11, 23	Link
IL10 CIRCADIAN INFLUENZA IMMUNE MALE-AB: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection. Blocking IL-10 signalling (Ab groups) abolishes the usual time-of-day survival advantage and triggers exaggerated lung immune responses, independent of infection time.	Mus musculus	Lung	Male-Ab	GSE287759	Sex, Disease	11, 23	Link
IL10 CIRCADIAN INFLUENZA IMMUNE MALE-IGG: Mice were treated with an anti-IL-10 receptor blocking antibody (Ab) or an isotype-matched IgG control before influenza infection. Blocking IL-10 signalling (Ab groups) abolishes the usual time-of-day survival advantage and triggers exaggerated lung immune responses, independent of infection time.	Mus musculus	Lung	Male-Igg	GSE287759	Sex, Disease	11, 23	Link
INSULIN AND LEPTIN OSCILLATIONS AD-LIB: Effect of timed-feeding (Ad-Lib or twice-a-night) on causing biphasic oscillations of circulating insulin and leptin.	Mus musculus	iWAT	Ad-Lib	GSE264173	Diet	12, 20, 16, 0, 4, 8	Link
INSULIN AND LEPTIN OSCILLATIONS TWICE-A-NIGHT: Effect of timed-feeding (Ad-Lib or twice-a-night) on causing biphasic oscillations of circulating insulin and leptin.	Mus musculus	iWAT	Twice-A-Night	GSE264173	Diet	12, 20, 16, 0, 4, 8	Link
INTESTINAL BMAL1 KO COLITIS WT: Intestinal-epithelium Bmal1 knockout remodels apoptotic and barrier pathways and lessens DSS-induced colitis severity, linking the local clock to gut inflammation.	Mus musculus	Digestive	Wild-Type	GSE271174	Control	0, 12, 18, 6	Link
KETONE BODIES AND KETOGENESIS FEMALE AD-LIBITUM: Sex difference in liver transcriptome of mice on calorie restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Ad-Libitum	GSE216416	Diet	10, 14, 22, 18, 2, 6	Link
KETONE BODIES AND KETOGENESIS FEMALE CALORIE-RESTRICTION: Sex difference in liver transcriptome of mice on calorie restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Calorie-Restriction	GSE216416	Diet	10, 14, 22, 18, 2, 6	Link
KETONE BODIES AND KETOGENESIS MALE AD-LIBITUM: Liver transcriptome of mice on calorie restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Ad-Libitum	GSE211975	Diet	10, 14, 22, 18, 2, 6	Link
KETONE BODIES AND KETOGENESIS MALE CALORIE-RESTRICTION: Liver transcriptome of mice on calorie restriction (CR) diet versus ad libitum (AL) fed mice	Mus musculus	Liver	Calorie-Restriction	GSE211975	Diet	10, 14, 22, 18, 2, 6	Link
KIDNEY CCRCC BMAL1 HIF2A CONTROL: Clear-cell renal-carcinoma xenografts were treated either with vehicle (Control) or PT2399, a selective HIF-2a antagonist (HIF2a_Inhibitor). Tumours with high BMAL1 expression show stronger transcriptional re-programming of hypoxia targets and greater growth inhibition after PT2399 therapy, implicating BMAL1 as a biomarker of HIF-2a-dependency.	Homo sapiens	Kidney	Control	GSE290779	Drug	0, 12	Link
KIDNEY CCRCC BMAL1 HIF2A HIF2A-INHIBITOR: Clear-cell renal-carcinoma xenografts were treated either with vehicle (Control) or PT2399, a selective HIF-2a antagonist (HIF2a_Inhibitor). Tumours with high BMAL1 expression show stronger transcriptional re-programming of hypoxia targets and greater growth inhibition after PT2399 therapy, implicating BMAL1 as a biomarker of HIF-2a-dependency.	Homo sapiens	Kidney	Hif2a-Inhibitor	GSE290779	Drug	0, 12	Link
LAWRENCE MICROGLIA DIURNAL BBB BREAKDOWN CONTROL: Evening vs morning systemic lipopolysaccharide (LPS) challenge causes greater neuroinflammation and blood-brain barrier (BBB) breakdown, highlighting microglia-dependent time-of-day differences in BBB disruption.	Mus musculus	Brain	Control	GSE263794	Inflammation	1, 13	Link
LAWRENCE MICROGLIA DIURNAL BBB BREAKDOWN LPS: Evening vs morning systemic lipopolysaccharide (LPS) challenge causes greater neuroinflammation and blood-brain barrier (BBB) breakdown, highlighting microglia-dependent time-of-day differences in BBB disruption.	Mus musculus	Brain	Lps	GSE263794	Inflammation	1, 13	Link
LIGHTCUE DISRUPTION INFLUENZA LD-FEMALE: Normal light-dark cues confer circadian protection against influenza; light disruption worsens disease unless feeding-time rhythms remain intact.	Mus musculus	Lung	Ld-Female	GSE288858	Light-Dark, Disease	11, 23	Link
LIVER BMAL1 KNOCKOUT SCIDATA 2025 FLOX: Temporal RNA-seq at CT2 & CT14 compares wild-type, flox/flox controls, whole-body Bmal1-/- (Global_KO) and hepatocyte-specific Bmal1-/- (Liver_KO), showing broad loss or re-programming of liver rhythmic genes.	Mus musculus	Liver	Flox	GSE284601	Knock-Out	2, 14	Link
LIVER BMAL1 KNOCKOUT SCIDATA 2025 GLOBAL-KO: Temporal RNA-seq at CT2 & CT14 compares wild-type, flox/flox controls, whole-body Bmal1-/- (Global_KO) and hepatocyte-specific Bmal1-/- (Liver_KO), showing broad loss or re-programming of liver rhythmic genes.	Mus musculus	Liver	Global-KO	GSE284601	Knock-Out	2, 14	Link
LIVER BMAL1 KNOCKOUT SCIDATA 2025 LIVER-KO: Temporal RNA-seq at CT2 & CT14 compares wild-type, flox/flox controls, whole-body Bmal1-/- (Global_KO) and hepatocyte-specific Bmal1-/- (Liver_KO), showing broad loss or re-programming of liver rhythmic genes.	Mus musculus	Liver	Liver-KO	GSE284601	Knock-Out	2, 14	Link
LIVER BMAL1 KNOCKOUT SCIDATA 2025 WT: Temporal RNA-seq at CT2 & CT14 compares wild-type, flox/flox controls, whole-body Bmal1-/- (Global_KO) and hepatocyte-specific Bmal1-/- (Liver_KO), showing broad loss or re-programming of liver rhythmic genes.	Mus musculus	Liver	Wild-Type	GSE284601	Control	2, 14	Link
MATERNAL DIET AFFECT ON 16 WEEKS OFFSPRING HIGH-FAT: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	High-Fat	GSE240147	Diet	13, 21, 17, 1, 5, 9	Link
MATERNAL DIET AFFECT ON 16 WEEKS OFFSPRING NORMAL-CHOW: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	Normal-Chow	GSE240147	Control	13, 21, 17, 1, 5, 9	Link
MATERNAL DIET AFFECT ON 4 WEEKS OFFSPRING HIGH-FAT: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	High-Fat	GSE240147	Diet	13, 21, 17, 1, 5, 9	Link
MATERNAL DIET AFFECT ON 4 WEEKS OFFSPRING NORMAL-CHOW: Maternal diet's impact on circadian rhythms of 4-week and 16-week offspring	Mus musculus	Liver	Normal-Chow	GSE240147	Control	13, 21, 17, 1, 5, 9	Link
MONKEY ADRENAL GLAND LEMOS 2006 WT: Genome-wide expression profiling to determine whether the adrenal gland of rhesus monkeys shows temporal gene expression across a 24-h period.	Rhesus macaques	Glands	Wild-Type	GSE2703	Control	11, 15, 23, 19, 3, 7	Link
MOSQUITO EMBRYO GOLTSEV 2009 DEVELOPMENT: Detailed temporal microarray assays of mosquito gene expression profiles revealed that the cuticular genes display biphasic expression during A. gambiae embryogenesi	Anopheles gambiae	Embryo	Development	GSE15001	Control	10, 13, 22, 16, 19, 37, 31, 28, 43, 40, 34, 46, 2, 4, 7, 6, 8, 25	Link
MOSQUITO HEAD PTITSYN 2011 WT: Document circadian rhythms in multiple molecular pathways essential for growth, development, immune response, detoxification/pesticide resistance.	Aedes aegypti	Head	Wild-Type		Control	76, 88, 72, 80, 92, 84	Link
MOSQUITO HEAD RUND 2011 DARK-DARK: DNA microarray analysis of An. gambiae under light/dark cycle (LD) and constant dark (DD) conditions.	Anopheles gambiae	Head	Dark-Dark		Control	24, 12, 20, 48, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOSQUITO LARVA KOUTSOS 2007 DEVELOPMENT: Genome-wide survey of mosquito gene expression profiles clustered temporally into developmental programs and spatially into adult tissue-specific patterns.	Anopheles gambiae	Larva	Development		Control	144, 192, 240, 48, 96	Link
MOSQUITO MID GUT MARINOTTI 2006 BLOOD-FED: Examining sex-differential changes in gene expression after blood meal.	Anopheles gambiae	Digestive	Blood-Fed		Control	24, 3, 72, 48, 96	Link
MOSQUITO THORAX CHOI 2014 LIVERPOOL-INFECTED: Dual RNA-seq time course analysis of Brugia Malayi parasite and host mosquito.	Aedes aegypti	Thoracic	Infected		Control	24, 72, 48, 96	Link
MOSQUITO THORAX CHOI 2014 RED-INFECTED: Dual RNA-seq time course analysis of Brugia Malayi parasite and host mosquito.	Aedes aegypti	Thoracic	Infected		Control	24, 72, 48, 96	Link
MOSQUITOE CIRCADIAN DISRUPTION BY AECYC KO: Impact of disrupting the circadian clock through a Cycle gene knockout (KO) on the transcriptome of Aedes aegypti mosquitoes.	Aedes aegypti	Whole Body	KO	GSE241953	Knock-Out	19, 11, 15, 7	Link
MOSQUITOE CIRCADIAN DISRUPTION BY AECYC WT: Impact of disrupting the circadian clock through a Cycle gene knockout (KO) on the transcriptome of Aedes aegypti mosquitoes.	Aedes aegypti	Whole Body	Wild-Type	GSE241953	Control	19, 11, 15, 7	Link
MOUSE 3T3 HUGHES 2009 WT: Comparison of oscillating transcription from mouse liver, NIH3T3, and U2OS cells showing 12-hour oscillatory transcripts.	Mus musculus	Cells	Wild-Type	GSE11923	Control	42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE ADRENAL GLAND NA 2018 WT: Mouse Adrenal Gland Transcriptome	Mus musculus	Glands	Wild-Type		Control	38, 58, 46, 54, 42, 50, 62, 74, 66, 70, 82, 78	Link
MOUSE ADRENAL GLAND ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Glands	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE AORTA RUDIC 2005 WT: Bioinformatic Analysis of Circadian Gene Oscillation in Mouse Aorta	Mus musculus	Heart	Wild-Type		Control	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE AORTA ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Heart	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE BMAL1 12H PHASED CONTROL-AM: 12 hours apart MSF synchronization and experimenting the knock-out of BMAL1.	Mus musculus	Skin	Control-Am	GSE134333	Control, Light-Dark	24, 39, 12, 15, 21, 48, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE BMAL1 12H PHASED CONTROL-PM: 12 hours apart MSF synchronization and experimenting the knock-out of BMAL1.	Mus musculus	Skin	Control-Pm	GSE134333	Control, Light-Dark	24, 39, 12, 15, 21, 48, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE BMAL1 12H PHASED KO-AM: 12 hours apart MSF synchronization and experimenting the knock-out of BMAL1.	Mus musculus	Skin	KO-Am	GSE134333	Knock-Out, Light-Dark	24, 39, 12, 15, 21, 48, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE BMAL1 12H PHASED KO-PM: 12 hours apart MSF synchronization and experimenting the knock-out of BMAL1.	Mus musculus	Skin	KO-Pm	GSE134333	Knock-Out, Light-Dark	24, 39, 12, 15, 21, 48, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE BMAL1 EFFECTS ON AGING AND SURVIVAL KO: Bmal1 elimination and certain aging-related phenotypes without affecting lifespan or metabolism, suggesting a nuanced role of Bmal1 beyond its traditional circadian functions.	Mus musculus	Liver	KO	GSE70499	Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE BMAL1 EFFECTS ON AGING AND SURVIVAL WT: Bmal1 elimination and certain aging-related phenotypes without affecting lifespan or metabolism, suggesting a nuanced role of Bmal1 beyond its traditional circadian functions.	Mus musculus	Liver	Wild-Type	GSE70499	Control	12, 20, 16, 0, 4, 8	Link
MOUSE BMAL1 TEMPERATURE COMPENSATION CONTROL-27C: MSFs kept in different temperatures and experimenting the knock-out of BMAL1.	Mus musculus	Skin	Control-27c	GSE134333	Control, Temperature	42, 24, 26, 20, 22, 46, 44, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BMAL1 TEMPERATURE COMPENSATION CONTROL-32C: MSFs kept in different temperatures and experimenting the knock-out of BMAL1.	Mus musculus	Skin	Control-32c	GSE134333	Control, Temperature	42, 24, 26, 20, 22, 46, 44, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BMAL1 TEMPERATURE COMPENSATION CONTROL-37C: MSFs kept in different temperatures and experimenting the knock-out of BMAL1.	Mus musculus	Skin	Control-37c	GSE134333	Control, Temperature	42, 24, 26, 20, 22, 46, 44, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BMAL1 TEMPERATURE COMPENSATION KO-27C: MSFs kept in different temperatures and experimenting the knock-out of BMAL1.	Mus musculus	Skin	KO-27c	GSE134333	Knock-Out, Temperature	42, 24, 26, 20, 22, 46, 44, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BMAL1 TEMPERATURE COMPENSATION KO-32C: MSFs kept in different temperatures and experimenting the knock-out of BMAL1.	Mus musculus	Skin	KO-32c	GSE134333	Knock-Out, Temperature	42, 24, 26, 20, 22, 46, 44, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BMAL1 TEMPERATURE COMPENSATION KO-37C: MSFs kept in different temperatures and experimenting the knock-out of BMAL1.	Mus musculus	Skin	KO-37c	GSE134333	Knock-Out, Temperature	42, 24, 26, 20, 22, 46, 44, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BRAIN STEM ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Brain	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE BREAST YANG 2017 WT: Cellular mechano-environment regulates the mammary circadian clock.	Mus musculus	Breast	Wild-Type		Control	11, 39, 27, 15, 23, 19, 47, 31, 43, 35, 3, 7	Link
MOUSE BROWN FAT ANTERIOR DORSUM ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Adipose	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE CEREBELLUM ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Brain	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE CHOROID PLEXUS AND SCN KO: Circadian regulation of cellular processes in mouse choroid plexus (ChP) and their dependence on signals from the clock in the suprachiasmatic nuclei (SCN).	Mus musculus	Brain	KO	GSE243858	Control	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE CHOROID PLEXUS AND SCN WT: Circadian regulation of cellular processes in mouse choroid plexus (ChP) and their dependence on signals from the clock in the suprachiasmatic nuclei (SCN).	Mus musculus	Brain	Wild-Type	GSE243858	Control	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE CORTEX SNORD116 WT FEMALE: Baseline circadian atlas of male vs female wild-type mice-reference arm for Snord116 imprinting study-showing sex-specific light x genotype gene-network effects.	Mus musculus	Prefrontal cortex	Female	GSE297702	Sex	12, 15, 21, 18, 0, 3, 6, 9	Link
MOUSE CORTEX SNORD116 WT MALE: Baseline circadian atlas of male vs female wild-type mice-reference arm for Snord116 imprinting study-showing sex-specific light x genotype gene-network effects.	Mus musculus	Prefrontal cortex	Male	GSE297702	Sex	12, 15, 21, 18, 0, 3, 6, 9	Link
MOUSE CORTICAL COLLECTING DUCT ZUBER 2009 WT: Circadian rhythms in the distal nephron segments, i.e., distal convoluted tubule (DCT) and connecting tubule (CNT) and the cortical collecting duct (CCD)	Mus musculus	Kidney	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE DIET MOISAN 2021 HF: Mouse treated with different diet conditions	Mus musculus	Hippocampus	Hf		Diet	0, 12, 18, 6	Link
MOUSE DIET MOISAN 2021 HFR: Mouse treated with different diet conditions	Mus musculus	Hippocampus	Hfr		Diet	0, 12, 18, 6	Link
MOUSE DIET MOISAN 2021 NC: Mouse treated with different diet conditions	Mus musculus	Hippocampus	Nc		Diet	0, 12, 18, 6	Link
MOUSE DIET MOISAN 2021 NCR: Mouse treated with different diet conditions	Mus musculus	Hippocampus	Ncr		Diet	0, 12, 18, 6	Link
MOUSE DISTAL COLON HOOGERWERF 2008 WT: Microarray transcriptional profiling of mRNA expression in the mouse distal colon.	Mus musculus	Digestive	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE DISTAL CONVOLUTED TUBULE ZUBER 2009 WT: Circadian rhythms in the distal nephron segments, i.e., distal convoluted tubule (DCT) and connecting tubule (CNT) and the cortical collecting duct (CCD)	Mus musculus	Kidney	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE EPIDIDYMAL ADIPOSE ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Adipose	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE FETAL KIDNEY DAN 2020 WT: Examination of RNA-seq time series of developing fetal mouse kidnes from embryonic ages E18 to E20.5 (inclusive)	Mus musculus	Kidney	Wild-Type		Control	24, 12, 20, 48, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE FIBROBLAST GRECO 2018 AHCY-KO: RNA-Seq Mouse Embryonic Fibroblast comparing Wild-Type to AHCY Knock-Out	Mus musculus	Cells	Ahcy-KO		Knock-Out	24, 12, 20, 16, 32, 28	Link
MOUSE FIBROBLAST GRECO 2018 WT: RNA-Seq Mouse Embryonic Fibroblast comparing Wild-Type to AHCY Knock-Out	Mus musculus	Cells	Wild-Type		Control	24, 12, 20, 16, 32, 28	Link
MOUSE HEART BMAL1KO ESSER 2024 KO-FEMALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts (sampled over 24h). Female hearts have more rhythmic genes than males under normal conditions, and the loss of Bmal1 blunts or abolishes most sex differences in the cardiac circadian transcriptome. This indicates that Bmal1-driven clock output in heart mediates a large portion of the observed sex-specific gene expression patterns.	Mus musculus	Heart	KO-Female	GSE262714	Knock-Out, Sex	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE HEART BMAL1KO ESSER 2024 KO-MALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts (sampled over 24h). Female hearts have more rhythmic genes than males under normal conditions, and the loss of Bmal1 blunts or abolishes most sex differences in the cardiac circadian transcriptome. This indicates that Bmal1-driven clock output in heart mediates a large portion of the observed sex-specific gene expression patterns.	Mus musculus	Heart	KO-Male	GSE262714	Knock-Out, Sex	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE HEART BMAL1KO ESSER 2024 WT-FEMALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts (sampled over 24h). Female hearts have more rhythmic genes than males under normal conditions, and the loss of Bmal1 blunts or abolishes most sex differences in the cardiac circadian transcriptome. This indicates that Bmal1-driven clock output in heart mediates a large portion of the observed sex-specific gene expression patterns.	Mus musculus	Heart	Wild-Type-Female	GSE262714	Control	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE HEART BMAL1KO ESSER 2024 WT-MALE: Cardiomyocyte-specific Bmal1 knockout vs wild-type in male and female mouse hearts (sampled over 24h). Female hearts have more rhythmic genes than males under normal conditions, and the loss of Bmal1 blunts or abolishes most sex differences in the cardiac circadian transcriptome. This indicates that Bmal1-driven clock output in heart mediates a large portion of the observed sex-specific gene expression patterns.	Mus musculus	Heart	Wild-Type-Male	GSE262714	Control	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE HEART GAUCHER 2022 HYPOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Heart	Hypoxic		Oxygen-Level	12, 20, 16, 0, 4, 8	Link
MOUSE HEART GAUCHER 2022 NORMOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Heart	Normoxic		Oxygen-Level	12, 20, 16, 0, 4, 8	Link
MOUSE HEART ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Heart	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE HEPACTIC ALBCRE HYPOXIA: Transcriptional response of HIF1a, and Bmal1 Knock-Out in hypoxia and normoxia	Mus musculus	Liver	Hypoxia	GSE254438	Knock-Out, Oxygen-Level	4, 16	Link
MOUSE HEPACTIC ALBCRE NORMOXIA: Transcriptional response of HIF1a, and Bmal1 Knock-Out in hypoxia and normoxia	Mus musculus	Liver	Normoxia	GSE254438	Knock-Out, Oxygen-Level	4, 16	Link
MOUSE HEPACTIC BMAL1 HYPOXIA: Transcriptional response of HIF1a, and Bmal1 Knock-Out in hypoxia and normoxia	Mus musculus	Liver	Hypoxia	GSE254438	Knock-Out, Oxygen-Level	4, 16	Link
MOUSE HEPACTIC BMAL1 NORMOXIA: Transcriptional response of HIF1a, and Bmal1 Knock-Out in hypoxia and normoxia	Mus musculus	Liver	Normoxia	GSE254438	Knock-Out, Oxygen-Level	4, 16	Link
MOUSE HEPACTIC HIF1A HYPOXIA: Transcriptional response of HIF1a, and Bmal1 Knock-Out in hypoxia and normoxia	Mus musculus	Liver	Hypoxia	GSE254438	Knock-Out, Oxygen-Level	4, 16	Link
MOUSE HEPACTIC HIF1A NORMOXIA: Transcriptional response of HIF1a, and Bmal1 Knock-Out in hypoxia and normoxia	Mus musculus	Liver	Normoxia	GSE254438	Knock-Out, Oxygen-Level	4, 16	Link
MOUSE HEPATOCYTE AD LIB GUAN 2020 KO: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	KO		Knock-Out	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE AD LIB GUAN 2020 WT: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	Wild-Type		Control	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE AND FEEDING KO AD-LIBITUM: Control of diurnal rhythms by the REV-ERBa and REV-ERBb KO and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	Ad-Libitum	GSE143524	Knock-Out, Diet	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE AND FEEDING KO REVERSE-PHASE-FEEDING: Control of diurnal rhythms by the REV-ERBa and REV-ERBb KO and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	Reverse-Phase-Feeding	GSE143524	Knock-Out, Diet	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE AND FEEDING WT AD-LIBITUM: Control of diurnal rhythms by the REV-ERBa and REV-ERBb KO and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	Ad-Libitum	GSE143524	Control, Diet	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE AND FEEDING WT REVERSE-PHASE-FEEDING: Control of diurnal rhythms by the REV-ERBa and REV-ERBb KO and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	Reverse-Phase-Feeding	GSE143524	Control, Diet	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE EC GUAN 2020 KO: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	KO		Knock-Out	10, 4, 22, 16	Link
MOUSE HEPATOCYTE EC GUAN 2020 WT: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	Wild-Type		Control	10, 4, 22, 16	Link
MOUSE HEPATOCYTE IN ENDOTHELIAL CELLS KO: Control of diurnal rhythms by the REV-ERBa and REV-ERBb Knock-Out and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	KO	GSE143524	Knock-Out	10, 4, 22, 16	Link
MOUSE HEPATOCYTE IN ENDOTHELIAL CELLS WT: Control of diurnal rhythms by the REV-ERBa and REV-ERBb Knock-Out and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	Wild-Type	GSE143524	Control	10, 4, 22, 16	Link
MOUSE HEPATOCYTE IN KUPFFER CELLS KO: Control of diurnal rhythms by the REV-ERBa and REV-ERBb Knock-Out and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	KO	GSE143524	Knock-Out	10, 4, 22, 16	Link
MOUSE HEPATOCYTE IN KUPFFER CELLS WT: Control of diurnal rhythms by the REV-ERBa and REV-ERBb Knock-Out and feeding. Analysis of gene expressions in different liver cell types.	Mus musculus	Liver	Wild-Type	GSE143524	Control	10, 4, 22, 16	Link
MOUSE HEPATOCYTE KC GUAN 2020 KO: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	KO		Knock-Out	10, 4, 22, 16	Link
MOUSE HEPATOCYTE KC GUAN 2020 WT: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	Wild-Type		Control	10, 4, 22, 16	Link
MOUSE HEPATOCYTE RPF GUAN 2020 KO: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	KO		Knock-Out	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HEPATOCYTE RPF GUAN 2020 WT: RNA sequencing in livers, isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, ATAC-seq in isolated EC and KC of control and adult hepatocytes REV-ERB a/b double knockout cell, single nuclei RNA-seq in control and adult hepatocytes REV-ERB a/b double knockout cell	Mus musculus	Liver	Wild-Type		Control	10, 13, 22, 16, 19, 1, 4, 7	Link
MOUSE HIGH FAT DIET KIDNEY 2021 HFK: RNASeq samples of two groups (normal chow vs HFD), three replicates, 6 time points for RNA-seq in GHTF	Mus musculus	Kidney	Hfk		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE HIGH FAT DIET KIDNEY 2021 NCK: RNASeq samples of two groups (normal chow vs HFD), three replicates, 6 time points for RNA-seq in GHTF	Mus musculus	Kidney	Nck		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE HYPOTHALAMUS ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Brain	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE INTESTINAL EPITHELIA TOGNINI 2017 KETOGENIC-DIET: Intestinal epithelia microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Digestive	Ketogenic-Diet		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE INTESTINAL EPITHELIA TOGNINI 2017 NORMAL-CHOW: Intestinal epithelia microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Digestive	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE KIDNEY GAUCHER 2022 HYPOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Kidney	Hypoxic		Oxygen-Level	12, 20, 16, 0, 4, 8	Link
MOUSE KIDNEY GAUCHER 2022 NORMOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Kidney	Normoxic		Oxygen-Level	12, 20, 16, 0, 4, 8	Link
MOUSE KIDNEY ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Kidney	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE LAZAR ARCUATE 2024 CONTROL: Circadian gene expression in the hypothalamic arcuate nucleus of control vs liver-clock disrupted (Rev-Erba/beta double knockout in hepatocytes, HepDKO) mice. The loss of the liver clock sends altered signals via vagal afferents, leading to reprogramming of rhythmic transcripts in the arcuate nucleus that regulate feeding behavior and metabolism.	Mus musculus	Brain	Control	GSE248462	Knock-Out	10, 4, 22, 16	Link
MOUSE LAZAR ARCUATE 2024 HEPDKO: Circadian gene expression in the hypothalamic arcuate nucleus of control vs liver-clock disrupted (Rev-Erba/beta double knockout in hepatocytes, HepDKO) mice. The loss of the liver clock sends altered signals via vagal afferents, leading to reprogramming of rhythmic transcripts in the arcuate nucleus that regulate feeding behavior and metabolism.	Mus musculus	Brain	Hepdko	GSE248462	Knock-Out	10, 4, 22, 16	Link
MOUSE LAZAR NODOSE 2024 CONTROL: Circadian transcriptomic analysis of the vagal nodose ganglion in control vs HepDKO mice. Eliminating the liver's clock (Rev-Erba/beta in hepatocytes) alters rhythmic gene expression in vagal sensory neurons, suggesting that liver clock disruption feeds back to the peripheral nervous system and modulates neuroimmune and metabolic signaling rhythms.	Mus musculus	Nervous	Control	GSE248462	Knock-Out	10, 4, 22, 16	Link
MOUSE LAZAR NODOSE 2024 HEPDKO: Circadian transcriptomic analysis of the vagal nodose ganglion in control vs HepDKO mice. Eliminating the liver's clock (Rev-Erba/beta in hepatocytes) alters rhythmic gene expression in vagal sensory neurons, suggesting that liver clock disruption feeds back to the peripheral nervous system and modulates neuroimmune and metabolic signaling rhythms.	Mus musculus	Nervous	Hepdko	GSE248462	Knock-Out	10, 4, 22, 16	Link
MOUSE LIVER CLOCK KNOCKOUT AD LIBITUM PAOLO 2019 KO:	Mus musculus	Liver	KO		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER CLOCK KNOCKOUT AD LIBITUM PAOLO 2019 RE:	Mus musculus	Liver	Re		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER CLOCK KNOCKOUT AD LIBITUM PAOLO 2019 WT:	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER CLOCK KNOCKOUT TRF PAOLO 2019 KO:	Mus musculus	Liver	KO		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER CLOCK KNOCKOUT TRF PAOLO 2019 RE:	Mus musculus	Liver	Re		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER CLOCK KNOCKOUT TRF PAOLO 2019 WT:	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER ECKEL MAHAN 2022 KO: Inducible insulin receptor knockout mice to look at hepatic gene expression around the circadian clock	Mus musculus	Liver	KO		Knock-Out	24, 12, 20, 16, 0, 2, 4, 8	Link
MOUSE LIVER ECKEL MAHAN 2022 WT: Inducible insulin receptor knockout mice to look at hepatic gene expression around the circadian clock	Mus musculus	Liver	Wild-Type		Control	24, 12, 20, 16, 0, 2, 4, 8	Link
MOUSE LIVER ECKEL-MAHAN 2013 HIGH-FAT: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	High-Fat	GSE52333	Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER ECKEL-MAHAN 2013 NORMAL-CHOW: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	Normal-Chow	GSE52333	Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER GAUCHER 2018 CHRONIC-ETOH: Liver RNASeq chronically treated with ethanol	Mus musculus	Liver	Chronic-Etoh		Drug Treatment	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER GAUCHER 2018 WT: Liver RNASeq chronically treated with ethanol	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER GAUCHER 2022 HYPOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Liver	Hypoxic		Oxygen-Level	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER GAUCHER 2022 NORMOXIC: Normoxic and Hypoxic mice, experiments done in the liver, kidney, and heart	Mus musculus	Liver	Normoxic		Oxygen-Level	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER HUGHES 2009 WT: Circadian microarray of mouse liver over a 48 hour time course	Mus musculus	Liver	Wild-Type		Control	42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE LIVER KINOUCHI 2018 FASTING: Liver RNASeq in a fasting condition	Mus musculus	Liver	Fasting		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER KINOUCHI 2018 NORMAL-CHOW: Liver RNASeq in a fasting condition	Mus musculus	Liver	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MASRI 2014 SIRT1-KO: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Sirt1-KO	GSE57830	Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MASRI 2014 SIRT1-WT: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Sirt1-Wild-Type	GSE57830	Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MASRI 2014 SIRT6-KO: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Sirt6-KO	GSE54652	Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MASRI 2014 SIRT6-WT: Genomic partitioning by two independent sirtuins contributes to differential control of circadian metabolism.	Mus musculus	Liver	Sirt6-Wild-Type	GSE54652	Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MASRI 2016 LUNG-WT: Lung adenocarcinoma operates as an endogenous reorganizer of circadian metabolism.	Mus musculus	Liver	Lung-Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MASRI 2016 TUMOR-BEARING-LUNG: Lung adenocarcinoma operates as an endogenous reorganizer of circadian metabolism.	Mus musculus	Liver	Tumor-Bearing-Lung		Cancer	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MILLER 2007 WT: Mouse Wild Type Liver Transcriptome	Mus musculus	Liver	Wild-Type		Control	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE LIVER MUSCLE DUB RE LIVER LMRE: Liver muscle double KO and RE of genes	Mus musculus	Liver	Lmre		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MUSCLE DUB RE LIVER WT DUB: Liver muscle double KO and RE of genes	Mus musculus	Liver	Dub		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MUSCLE DUB RE MUS LMRE: Liver muscle double KO and RE of genes	Mus musculus	Muscle	Lmre		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER MUSCLE DUB RE MUS WT DUB: Liver muscle double KO and RE of genes	Mus musculus	Muscle	Dub		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER NAN 2018 LIBRAMED-TREATMENT: Liver RNASeq in an experiment treated with the drug Libramed	Mus musculus	Liver	Libramed-Treatment		Drug Treatment	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER NAN 2018 WT: Liver RNASeq in an experiment treated with the drug Libramed	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER PANDA 2002 WT: Gene expression profiling to identify cycling transcripts in the SCN and in the liver	Mus musculus	Liver	Wild-Type		Control	38, 58, 46, 54, 30, 42, 50, 34, 62, 74, 66, 70	Link
MOUSE LIVER PETRUS 2020 CONTROL-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Control-Dark		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER PETRUS 2020 CONTROL-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Control-Light		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER PETRUS 2020 TRYPTOPHAN-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Tryptophan-Dark		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER PETRUS 2020 TRYPTOPHAN-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Liver	Tryptophan-Light		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER SASSONE ILLUMINA KO: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	KO		Knock-Out	NA	Link
MOUSE LIVER SASSONE ILLUMINA RE: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Re		Knock-Out	NA	Link
MOUSE LIVER SCN RE KO: RNASeq of liver in WT, Bmal1 KO and SCN-RE mice	Mus musculus	Liver	KO		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER SCN RE RE: RNASeq of liver in WT, Bmal1 KO and SCN-RE mice	Mus musculus	Liver	Re		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER SCN RE WT: RNASeq of liver in WT, Bmal1 KO and SCN-RE mice	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER TERAJIMA 2017 ADARB1-KO: Identification A-to-I RNA editing as a key mechanism of post-transcriptional regulation in the circadian clockwork.	Mus musculus	Liver	Adarb1-KO		Knock-Out	10, 14, 22, 18, 2, 6	Link
MOUSE LIVER TERAJIMA 2017 WT: Identification A-to-I RNA editing as a key mechanism of post-transcriptional regulation in the circadian clockwork.	Mus musculus	Liver	Wild-Type		Control	10, 14, 22, 18, 2, 6	Link
MOUSE LIVER TOGNINI 2017 KETOGENIC-DIET: Liver microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Liver	Ketogenic-Diet		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER TOGNINI 2017 NORMAL-CHOW: Liver microarray in a ketogenic diet vs. normal chow experiment.	Mus musculus	Liver	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Liver	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE LUNG WOLFF 2023 OLD: Circadian gene expression comparison in lungs of young adult vs old mice, highlighting age-related attenuation and alteration of rhythmic transcripts. Older mice show fewer and dampened circadian oscillations in lung gene expression, implicating aging as a modifier of the circadian transcriptome.	Mus musculus	Lung	Old	GSE261234	Age	12, 20, 16, 0, 4, 8	Link
MOUSE LUNG WOLFF 2023 YOUNG: Circadian gene expression comparison in lungs of young adult vs old mice, highlighting age-related attenuation and alteration of rhythmic transcripts. Older mice show fewer and dampened circadian oscillations in lung gene expression, implicating aging as a modifier of the circadian transcriptome.	Mus musculus	Lung	Young	GSE261234	Age	12, 20, 16, 0, 4, 8	Link
MOUSE LUNG ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Lung	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE MACROPHAGES KELLER 2009 DARK: Macrophages in all dark.	Mus musculus	Cells	Dark		Control	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE MEF GRECO 2018 DMSO:	Mus musculus	Cells	Dmso		Control	24, 12	Link
MOUSE MEF GRECO 2018 DZNEP:	Mus musculus	Cells	Dznep		Control	24, 12	Link
MOUSE MPFC MCCLUNG 2025 FEMALE: Sex-specific circadian transcriptomic rhythms in the mouse medial prefrontal cortex (mPFC). Approximately 12% of mPFC transcripts show daily oscillations, and the timing of core clock gene expression differs between males and females. Female mPFCs have slightly higher overlap with human PFC rhythmic genes and show some unique phase distributions compared to males, underscoring sex as a factor in cortical circadian regulation.	Mus musculus	Brain	Female	GSE284053	Sex	10, 14, 22, 18, 2, 6	Link
MOUSE MPFC MCCLUNG 2025 MALE: Sex-specific circadian transcriptomic rhythms in the mouse medial prefrontal cortex (mPFC). Approximately 12% of mPFC transcripts show daily oscillations, and the timing of core clock gene expression differs between males and females. Female mPFCs have slightly higher overlap with human PFC rhythmic genes and show some unique phase distributions compared to males, underscoring sex as a factor in cortical circadian regulation.	Mus musculus	Brain	Male	GSE284053	Sex	10, 14, 22, 18, 2, 6	Link
MOUSE MUSCLE ANDREWS 2010 WT: Skeletal muscle with Bmal1(-/-) condition	Mus musculus	Muscle	Wild-Type		Control	26, 38, 58, 22, 46, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE MUSCLE GASTROCNEMIUS ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Muscle	Wild-Type	GSE54652	Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE MUSCLE KINOUCHI 2018 FASTING: Muscle RNASeq in a fasting condition	Mus musculus	Muscle	Fasting		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE MUSCLE KINOUCHI 2018 NORMAL-CHOW: Muscle RNASeq in a fasting condition	Mus musculus	Muscle	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE NEUTROPHILDEPLETION BONEMARROW DEPLETED: Circadian transcriptional profiles of bone marrow under control vs neutrophil-depleted conditions, demonstrating that neutrophil loss disrupts normal rhythmic gene expression in extracellular matrix pathways.	Mus musculus	Bone Marrow	Depleted	GSE198770	Immune	13, 21, 17, 1, 5, 9	Link
MOUSE NEUTROPHILDEPLETION BONEMARROW WT: Circadian transcriptional profiles of bone marrow under control vs neutrophil-depleted conditions, demonstrating that neutrophil loss disrupts normal rhythmic gene expression in extracellular matrix pathways.	Mus musculus	Bone Marrow	Wild-Type	GSE198770	Control	13, 21, 17, 1, 5, 9	Link
MOUSE NEUTROPHILDEPLETION INTESTINE DEPLETED: Circadian gene expression in the small intestine under neutrophil-depleted vs control conditions, showing that loss of neutrophils alters rhythmic matrix-associated transcripts and circadian patterns of gene expression.	Mus musculus	Intestine	Depleted	GSE198770	Immune	9, 13, 5, 21, 17	Link
MOUSE NEUTROPHILDEPLETION INTESTINE WT: Circadian gene expression in the small intestine under neutrophil-depleted vs control conditions, showing that loss of neutrophils alters rhythmic matrix-associated transcripts and circadian patterns of gene expression.	Mus musculus	Intestine	Wild-Type	GSE198770	Control	9, 13, 5, 21, 17	Link
MOUSE NEUTROPHILDEPLETION LIVER DEPLETED: Circadian transcriptome of liver tissue in control vs neutrophil-depleted mice, indicating that neutrophil elimination disrupts normal circadian expression patterns of liver genes, particularly those linked to extracellular matrix organization.	Mus musculus	Liver	Depleted	GSE198770	Immune	13, 21, 17, 1, 5, 9	Link
MOUSE NEUTROPHILDEPLETION LIVER WT: Circadian transcriptome of liver tissue in control vs neutrophil-depleted mice, indicating that neutrophil elimination disrupts normal circadian expression patterns of liver genes, particularly those linked to extracellular matrix organization.	Mus musculus	Liver	Wild-Type	GSE198770	Control	13, 21, 17, 1, 5, 9	Link
MOUSE NEUTROPHILDEPLETION LUNG DEPLETED: Circadian gene expression in lung tissue with and without neutrophil depletion, illustrating that removal of neutrophils alters the temporal expression of matrix-related genes and perturbs lung circadian rhythms.	Mus musculus	Lung	Depleted	GSE198770	Immune	13, 21, 17, 1, 5, 9	Link
MOUSE NEUTROPHILDEPLETION LUNG WT: Circadian gene expression in lung tissue with and without neutrophil depletion, illustrating that removal of neutrophils alters the temporal expression of matrix-related genes and perturbs lung circadian rhythms.	Mus musculus	Lung	Wild-Type	GSE198770	Control	13, 21, 17, 1, 5, 9	Link
MOUSE NEUTROPHILDEPLETION SKIN BMAL1-KO: Circadian transcriptional profile of skin under control, neutrophil-depleted, and neutrophil-specific Bmal1 knockout conditions, showing that both neutropenia and neutrophil clock disruption alter normal circadian gene expression in skin tissues.	Mus musculus	Skin	Bmal1-KO	GSE198770	Immune, Knock-Out	24, 10, 13, 12, 15, 21, 22, 16, 19, 18, 1, 3, 5, 4, 7, 9	Link
MOUSE NEUTROPHILDEPLETION SKIN DEPLETED: Circadian transcriptional profile of skin under control, neutrophil-depleted, and neutrophil-specific Bmal1 knockout conditions, showing that both neutropenia and neutrophil clock disruption alter normal circadian gene expression in skin tissues.	Mus musculus	Skin	Depleted	GSE198770	Immune, Knock-Out	24, 10, 13, 12, 15, 21, 22, 16, 19, 18, 1, 3, 5, 4, 7, 9	Link
MOUSE NEUTROPHILDEPLETION SKIN WT: Circadian transcriptional profile of skin under control, neutrophil-depleted, and neutrophil-specific Bmal1 knockout conditions, showing that both neutropenia and neutrophil clock disruption alter normal circadian gene expression in skin tissues.	Mus musculus	Skin	Wild-Type	GSE198770	Control	24, 10, 13, 12, 15, 21, 22, 16, 19, 18, 1, 3, 5, 4, 7, 9	Link
MOUSE NIGHT FEEDING KO: RNASeq of liver in WT and Bmal1 KO mice under night feeding condition	Mus musculus	Liver	KO		Control	12, 20, 16, 0, 4, 8	Link
MOUSE NIGHT FEEDING WT: RNASeq of liver in WT and Bmal1 KO mice under night feeding condition	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE PITUITARY ZHANG 2014 WT: Wild-type C57/BL6 mouse tissue microarray in the Circadian Atlas project.	Mus musculus	Glands	Wild-Type	GSE54652	Control	42, 48, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE PREGNANCY METABOLIC FETUS CIRCADIAN-DISRUPTION: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Circadian-Disruption	GSE236201	Light-Dark	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC FETUS CONTROL: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Control	GSE236201	Light-Dark	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC METHOR CIRCADIAN-DISRUPTION: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Circadian-Disruption	GSE236201	Light-Dark	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC METHOR CONTROL: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Control	GSE236201	Light-Dark	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC OFFSPRING CIRCADIAN-DISRUPTION HIGH-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	High-Fat	GSE236201	Light-Dark, Diet	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC OFFSPRING CIRCADIAN-DISRUPTION LOW-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Low-Fat	GSE236201	Light-Dark, Diet	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC OFFSPRING CONTROL HIGH-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	High-Fat	GSE236201	Light-Dark, Diet	0, 12, 18, 6	Link
MOUSE PREGNANCY METABOLIC OFFSPRING CONTROL LOW-FAT: Maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.	Mus musculus	Liver	Low-Fat	GSE236201	Light-Dark, Diet	0, 12, 18, 6	Link
MOUSE RESTRICTED FEEDING BAT AD-LIB: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Adipose	Ad-Lib	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE RESTRICTED FEEDING BAT CR-DAY: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Adipose	Cr-Day	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE RESTRICTED FEEDING LIVER AD-LIB: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Ad-Lib	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE RESTRICTED FEEDING LIVER CR-DAY: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Cr-Day	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE RESTRICTED FEEDING LIVER CR-NIGHT: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Cr-Night	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE RESTRICTED FEEDING LIVER TR-DAY: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Tr-Day	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE RESTRICTED FEEDING LIVER TR-NIGHT: Circadian gene expression in brown adipose tissue (BAT) and liver under the following five conditions: ad libitum (AL); temporally restricted during the dark phase (TR-night) or light phase (TR-day); and calorically restricted during the dark phase (CR-night) or light phase (CR-day)	Mus musculus	Liver	Tr-Night	GSE266543	Diet	24, 12, 20, 16, 32, 44, 28, 36, 40, 0, 4, 8	Link
MOUSE SCN CONTROL:	Mus musculus	Brain	Control		Control	12, 20, 16, 0, 4, 8	Link
MOUSE SCN DZNEP: RNASeq of SCN in a DZnep treatment experiment	Mus musculus	Brain	Dznep		Control	9, 3, 15, 21	Link
MOUSE SCN HIGH-FAT:	Mus musculus	Brain	High-Fat		Control	12, 20, 16, 0, 4, 8	Link
MOUSE SCN NOLAN 2025 CRENEG: Circadian gene expression in the suprachiasmatic nucleus (SCN) of mice before and after inducible deletion of Zfhx3 (a circadian period-modulating gene) via tamoxifen, compared to Cre-negative controls. Inducible Zfhx3 knockout in adults shortens SCN clock period and causes loss of rhythms in many SCN genes, confirming that ZFHX3 is crucial for maintaining robust circadian oscillations in the adult SCN.	Mus musculus	Brain	Creneg	GSE261429	Knock-Out	10, 14, 22, 18, 2, 6	Link
MOUSE SCN NOLAN 2025 POSTTAM: Circadian gene expression in the suprachiasmatic nucleus (SCN) of mice before and after inducible deletion of Zfhx3 (a circadian period-modulating gene) via tamoxifen, compared to Cre-negative controls. Inducible Zfhx3 knockout in adults shortens SCN clock period and causes loss of rhythms in many SCN genes, confirming that ZFHX3 is crucial for maintaining robust circadian oscillations in the adult SCN.	Mus musculus	Brain	Posttam	GSE261429	Knock-Out	10, 14, 22, 18, 2, 6	Link
MOUSE SCN NOLAN 2025 PRETAM: Circadian gene expression in the suprachiasmatic nucleus (SCN) of mice before and after inducible deletion of Zfhx3 (a circadian period-modulating gene) via tamoxifen, compared to Cre-negative controls. Inducible Zfhx3 knockout in adults shortens SCN clock period and causes loss of rhythms in many SCN genes, confirming that ZFHX3 is crucial for maintaining robust circadian oscillations in the adult SCN.	Mus musculus	Brain	Pretam	GSE261429	Knock-Out	10, 14, 22, 18, 2, 6	Link
MOUSE SCN PETRUS 2020 CONTROL-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Brain	Control-Dark		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE SCN PETRUS 2020 CONTROL-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Brain	Control-Light		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE SCN PETRUS 2020 TRYPTOPHAN-DARK: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Brain	Tryptophan-Dark		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE SCN PETRUS 2020 TRYPTOPHAN-LIGHT: Mouse treated with different diet conditions and different feeding conditions.	Mus musculus	Brain	Tryptophan-Light		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE SCN SALINE WT: RNASeq of SCN in a saline treatment experiment	Mus musculus	Brain	Wild-Type		Control	9, 3, 15, 21	Link
MOUSE SKELETAL MUSCLE NA 2018 SIRT1-KO: Skeletal muscle RNASeq in a Sirt1KO experiment via a cre-lox system	Mus musculus	Muscle	Sirt1-KO		Knock-Out	19, 25, 13, 7	Link
MOUSE SKELETAL MUSCLE NA 2018 WT: Skeletal muscle RNASeq in a Sirt1KO experiment via a cre-lox system	Mus musculus	Muscle	Wild-Type		Control	19, 25, 13, 7	Link
MOUSE STRIATUM NA 2020 COCAINE-D2R-KO: RNASeq of striatum in a cocaine treatment experiment with D2R Knock-Out	Mus musculus	Brain	Cocaine-D2R-KO	GSE142657	Drug Treatment	11, 15, 23, 19, 3, 7	Link
MOUSE STRIATUM NA 2020 COCAINE.: RNASeq of striatum in a cocaine treatment experiment with D2R Knock-Out	Mus musculus	Brain	Cocaine.	GSE142657	Drug Treatment	11, 15, 23, 19, 3, 7	Link
MOUSE STRIATUM NA 2020 D2R-KO.: RNASeq of striatum in a cocaine treatment experiment with D2R Knock-Out	Mus musculus	Brain	D2R-KO.	GSE142657	Drug Treatment	11, 15, 23, 19, 3, 7	Link
MOUSE STRIATUM NA 2020 WT: RNASeq of striatum in a cocaine treatment experiment with D2R Knock-Out	Mus musculus	Brain	Wild-Type	GSE142657	Control	11, 15, 23, 19, 3, 7	Link
MOUSE SUPRACHIASMATIC NUCLEUS BALLANCE 2015 WT: Circadian RNA expression profile of the mammalian biological clock, the suprachiasmatic nucleus (SCN) in C57/BL6 mice, at 2-hour resolution using microarrays.	Mus musculus	Brain	Wild-Type		Control	56, 42, 50, 60, 62, 64, 32, 24, 26, 20, 48, 46, 44, 28, 40, 52, 58, 38, 22, 54, 30, 36, 34, 18	Link
MOUSE SUPRACHIASMATIC NUCLEUS PANDA 2002 WT: Gene expression profiling to identify cycling transcripts in the SCN and in the liver	Mus musculus	Brain	Wild-Type		Control	26, 38, 58, 22, 18, 30, 42, 50, 34, 62, 54	Link
MOUSE SYNTHESIS AND DEGRADATION EXON KO: Rhythmic RNA synthesis and rhythmic degradation and their importance on 24-h and 12-h RNA rhythms. These rhythms were predominantly regulated by Bmal1 and/or the core clock mechanism	Mus musculus	Cells	KO	GSE253826	Knock-Out	24, 26, 38, 46, 32, 44, 30, 28, 36, 40, 34, 42	Link
MOUSE SYNTHESIS AND DEGRADATION EXON WT: Rhythmic RNA synthesis and rhythmic degradation and their importance on 24-h and 12-h RNA rhythms. These rhythms were predominantly regulated by Bmal1 and/or the core clock mechanism	Mus musculus	Cells	Wild-Type	GSE253826	Control	24, 26, 38, 46, 32, 44, 30, 28, 36, 40, 34, 42	Link
MOUSE SYNTHESIS AND DEGRADATION INTRON KO: Rhythmic RNA synthesis and rhythmic degradation and their importance on 24-h and 12-h RNA rhythms. These rhythms were predominantly regulated by Bmal1 and/or the core clock mechanism	Mus musculus	Cells	KO	GSE253826	Knock-Out	24, 26, 38, 46, 32, 44, 30, 28, 36, 40, 34, 42	Link
MOUSE SYNTHESIS AND DEGRADATION INTRON WT: Rhythmic RNA synthesis and rhythmic degradation and their importance on 24-h and 12-h RNA rhythms. These rhythms were predominantly regulated by Bmal1 and/or the core clock mechanism	Mus musculus	Cells	Wild-Type	GSE253826	Control	24, 26, 38, 46, 32, 44, 30, 28, 36, 40, 34, 42	Link
MOUSE TRANSCRIPTOME EVENING-EXERCISE: Transcriptomic data for mouse exercise in light dark conditions.	Mus musculus	Liver	Evening-Exercise		Exercise	24, 12, 20, 16, 4, 8	Link
MOUSE TRANSCRIPTOME EVENING-SEDENTARY: Transcriptomic data for mouse exercise in light dark conditions.	Mus musculus	Liver	Evening-Sedentary		Exercise	24, 12, 20, 16, 4, 8	Link
MOUSE TRANSCRIPTOME MORNING-EXERCISE: Transcriptomic data for mouse exercise in light dark conditions.	Mus musculus	Liver	Morning-Exercise		Exercise	24, 12, 20, 16, 4, 8	Link
MOUSE TRANSCRIPTOME MORNING-SEDENTARY: Transcriptomic data for mouse exercise in light dark conditions.	Mus musculus	Liver	Morning-Sedentary		Exercise	24, 12, 20, 16, 4, 8	Link
MOUSE VENTRAL HIPPOCAMPUS KONRAD 2017 TEMPORAL-LOBE-EPILEPTIC: Hippocampus RNASeq in an experiment comparing epileptic vs normal brain.	Mus musculus	Brain	Temporal-Lobe-Epileptic	GSE54652	Disease	11, 15, 23, 19, 3, 7	Link
MOUSE VENTRAL HIPPOCAMPUS KONRAD 2017 WT: Hippocampus RNASeq in an experiment comparing epileptic vs normal brain.	Mus musculus	Brain	Wild-Type	GSE54652	Control	11, 15, 23, 19, 3, 7	Link
NEUROSPORA CRASSA ANANTHASUBRAMANIAM 2018 DMSN1: Sampling of liquid culture grown N. crassa every 2h over 22h in the dark from light to dark transition.	Neurospora crassa	Cells	Dmsn1		Light-Dark	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
NEUROSPORA CRASSA ANANTHASUBRAMANIAM 2018 WT: Sampling of liquid culture grown N. crassa every 2h over 22h in the dark from light to dark transition.	Neurospora crassa	Cells	Wild-Type		Control	10, 12, 20, 14, 22, 16, 18, 0, 2, 4, 6, 8	Link
NEUROSPORA GCN2 SIGNALING PATHWAY KO: GCN2 signaling pathway in circadian clock function by regulating histone acetylation under amino acid starvation.	Neurospora crassa	Cells	KO	GSE220169	Knock-Out	0, 12	Link
NEUROSPORA GCN2 SIGNALING PATHWAY WT: GCN2 signaling pathway in circadian clock function by regulating histone acetylation under amino acid starvation.	Neurospora crassa	Cells	Wild-Type	GSE220169	Control	0, 12	Link
PFC PYRAMIDAL PV CIRCADIAN FEMALE-PV: In mouse medial prefrontal cortex, ~35 % of pyramidal-cell transcripts and ~18 % of PV-interneuron transcripts are rhythmic; PV rhythms are largely sex-specific.	Mus musculus	Brain	Female-Pv	GSE287818	Sex	10, 14, 22, 18, 2, 6	Link
PFC PYRAMIDAL PV CIRCADIAN FEMALE-PYR: In mouse medial prefrontal cortex, ~35 % of pyramidal-cell transcripts and ~18 % of PV-interneuron transcripts are rhythmic; PV rhythms are largely sex-specific.	Mus musculus	Brain	Female-Pyr	GSE287818	Sex	10, 14, 22, 18, 2, 6	Link
PFC PYRAMIDAL PV CIRCADIAN MALE-PV: In mouse medial prefrontal cortex, ~35 % of pyramidal-cell transcripts and ~18 % of PV-interneuron transcripts are rhythmic; PV rhythms are largely sex-specific.	Mus musculus	Brain	Male-Pv	GSE287818	Sex	10, 14, 22, 18, 2, 6	Link
PFC PYRAMIDAL PV CIRCADIAN MALE-PYR: In mouse medial prefrontal cortex, ~35 % of pyramidal-cell transcripts and ~18 % of PV-interneuron transcripts are rhythmic; PV rhythms are largely sex-specific.	Mus musculus	Brain	Male-Pyr	GSE287818	Sex	10, 14, 22, 18, 2, 6	Link
RAT BRAIN STAEHLE 2020 CEA-WT: High-throughput qRT-PCR profiling of 145 genes using Fluidigm's 96.96 array. Bilateral samples from a single animal were considered as one sample. There was no inter-animal pooling of samples	Rattus norvegicus	Brain	Cea-Wild-Type		Control	9, 3, 5	Link
RAT BRAIN STAEHLE 2020 DVC-WT: High-throughput qRT-PCR profiling of 145 genes using Fluidigm's 96.96 array. Bilateral samples from a single animal were considered as one sample. There was no inter-animal pooling of samples	Rattus norvegicus	Brain	Dvc-Wild-Type		Control	9, 3, 5	Link
RAT LIVER ALMON 2008 WT: Global gene expression analysis in the identification of circadian-regulated genes involved in drug action.	Rattus norvegicus	Liver	Wild-Type	GSE8988	Control	11, 10, 13, 12, 20, 14, 22, 16, 24, 18, 23, 1, 2, 4, 6, 8	Link
RAT SLEEP AND BRAIN DISORDERS SLEEP-DEPRIVED: Sleep deprivation in Long Evans rats were subjects being sleep deprived for 6 hours and then samples being collected every 2h during the recovery.	Rattus norvegicus	Brain	Sleep-Deprived	GSE250324	Sleep	0, 2, 4, 8	Link
RAT SLEEP AND BRAIN DISORDERS WT: Sleep deprivation in Long Evans rats were subjects being sleep deprived for 6 hours and then samples being collected every 2h during the recovery.	Rattus norvegicus	Brain	Wild-Type	GSE250324	Control	0, 2, 4, 8	Link
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY ADRENAL GLAND MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adipose	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adipose	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adipose	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY BROWN ADIPOSE MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Adipose	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY EXTENSOR DIGITORUM LONGUS TENDON MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS MUSCLE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS MUSCLE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS TENDON MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUS TENDON MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUSTENDON FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY GASTROCNEMIUSTENDON FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY HEART FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY HEART FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY HEART MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY HEART MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Heart	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY KIDNEY FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY KIDNEY FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY KIDNEY MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY KIDNEY MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Kidney	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY LIVER FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY LIVER FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY LIVER MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY LIVER MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Liver	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY LUNG FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY LUNG FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY LUNG MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY LUNG MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Lung	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY OVARY FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Reproductive	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY OVARY FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Reproductive	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY PITUITARY FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY PITUITARY FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY PITUITARY MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY PITUITARY MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Glands	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY QUADRICEPS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY QUADRICEPS FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY QUADRICEPS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY QUADRICEPS MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY SOLEUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY SOLEUS FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY SOLEUS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY SOLEUS MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY SPLEEN FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY SPLEEN FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY SPLEEN MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY SPLEEN MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Spleen	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY TESTIS MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Reproductive	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY TESTIS MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Reproductive	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Muscle	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON MALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY TIBIALIS ANTERIOR TENDON MALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Cells	Wild-Type	GSE243060	Control	5, 17	Link
RELATIVE ENERGY DEFICIENCY UTERUS FEMALE DEFICIENT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Reproductive	Deficient	GSE243060	Diet	5, 17	Link
RELATIVE ENERGY DEFICIENCY UTERUS FEMALE WT: Placing mice under energy-deficient and -sufficient conditions through an exercise-for-food paradigm to explore the impact of energy deficiency.	Mus musculus	Reproductive	Wild-Type	GSE243060	Control	5, 17	Link
RIJOFERREIRA AEDES SALIVARYGLAND 2025 DD: Daily gene expression rhythms in Aedes aegypti mosquito salivary glands under normal light-dark (LD) and constant darkness (DD) conditions, revealing that ~50% of salivary gland genes (including key blood-feeding factors) oscillate circadianly, aligning with the mosquito's nocturnal feeding behavior.	Anopheles stephensi	Salivary Gland	Dd	GSE238168	Light-Dark	24, 18, 12, 6	Link
RIJOFERREIRA AEDES SALIVARYGLAND 2025 LD: Daily gene expression rhythms in Aedes aegypti mosquito salivary glands under normal light-dark (LD) and constant darkness (DD) conditions, revealing that ~50% of salivary gland genes (including key blood-feeding factors) oscillate circadianly, aligning with the mosquito's nocturnal feeding behavior.	Anopheles stephensi	Salivary Gland	Ld	GSE238168	Light-Dark	24, 18, 12, 6	Link
RIJOFERREIRA ANOPHELES SALIVARYGLAND 2025 DD: Circadian RNA-seq of mosquito salivary glands collected under a 12 h light-dark cycle (LD) or constant darkness (DD). Roughly half of gland transcripts oscillate with ~24 h period- including genes encoding anti-hemostatic factors and odorant/chemosensory proteins- priming the vector for its nocturnal blood meal and enhancing malaria transmission efficiency.	Anopheles stephensi	Salivary gland	Dd	GSE284425	Light-Dark	24, 12, 20, 48, 16, 32, 44, 56, 28, 36, 40, 52, 60, 0, 64, 4, 68, 8, 72	Link
RIJOFERREIRA ANOPHELES SALIVARYGLAND 2025 LD: Circadian RNA-seq of mosquito salivary glands collected under a 12 h light-dark cycle (LD) or constant darkness (DD). Roughly half of gland transcripts oscillate with ~24 h period- including genes encoding anti-hemostatic factors and odorant/chemosensory proteins- priming the vector for its nocturnal blood meal and enhancing malaria transmission efficiency.	Anopheles stephensi	Salivary gland	Ld	GSE284425	Light-Dark	24, 12, 20, 48, 16, 32, 44, 56, 28, 36, 40, 52, 60, 0, 64, 4, 68, 8, 72	Link
RIJOFERREIRA PLASMODIUM SPOROZOITE 2025 DD: Circadian transcriptome of malaria-parasite sporozoites isolated from the same mosquito glands under normal light-dark (LD) and constant darkness (DD) conditions. A defined subset of sporozoite genes- many involved in motility and host invasion- display ~24 h oscillations, indicating that the parasite clock synchronises with the mosquito's to maximise nighttime infectivity.	Plasmodium berghei	Parasite	Dd	GSE284425	Light-Dark	24, 12, 20, 48, 16, 32, 44, 56, 28, 36, 40, 52, 60, 0, 64, 4, 68, 8, 72	Link
RIJOFERREIRA PLASMODIUM SPOROZOITE 2025 DD: Circadian transcriptome of malaria-parasite sporozoites isolated from the same mosquito glands under normal light-dark (LD) and constant darkness (DD) conditions. A defined subset of sporozoite genes- many involved in motility and host invasion- display ~24 h oscillations, indicating that the parasite clock synchronises with the mosquito's to maximise nighttime infectivity.	Plasmodium berghei	Parasite	Dd	GSE284425	Light-Dark	24, 12, 20, 48, 16, 32, 44, 56, 28, 36, 40, 52, 60, 0, 64, 4, 68, 8, 72	Link
RIJOFERREIRA PLASMODIUM SPOROZOITE 2025 LD: Circadian transcriptome of malaria-parasite sporozoites isolated from the same mosquito glands under normal light-dark (LD) and constant darkness (DD) conditions. A defined subset of sporozoite genes- many involved in motility and host invasion- display ~24 h oscillations, indicating that the parasite clock synchronises with the mosquito's to maximise nighttime infectivity.	Plasmodium berghei	Parasite	Ld	GSE284425	Light-Dark	24, 12, 20, 48, 16, 32, 44, 56, 28, 36, 40, 52, 60, 0, 64, 4, 68, 8, 72	Link
RIJOFERREIRA PLASMODIUM SPOROZOITE 2025 LD: Circadian transcriptome of malaria-parasite sporozoites isolated from the same mosquito glands under normal light-dark (LD) and constant darkness (DD) conditions. A defined subset of sporozoite genes- many involved in motility and host invasion- display ~24 h oscillations, indicating that the parasite clock synchronises with the mosquito's to maximise nighttime infectivity.	Plasmodium berghei	Parasite	Ld	GSE284425	Light-Dark	24, 12, 20, 48, 16, 32, 44, 56, 28, 36, 40, 52, 60, 0, 64, 4, 68, 8, 72	Link
SHEEP RUMEN VFA DIET GRAIN: High-VFA (grain) versus low-VFA (hay) media reset epithelial clock genes and transporters, linking nutrient load to the rumen circadian programme.	Ovis aries	Rumen epithelium	Grain	GSE286932	Diet	12, 20, 16, 0, 4, 8	Link
SHEEP RUMEN VFA DIET HAY: High-VFA (grain) versus low-VFA (hay) media reset epithelial clock genes and transporters, linking nutrient load to the rumen circadian programme.	Ovis aries	Rumen epithelium	Hay	GSE286932	Diet	12, 20, 16, 0, 4, 8	Link
SIFUENTES ZEBRAFISH 2016 INJURY: Transcriptional profiles of 0, 8, and 16 hour post-lesion zebrafish Muller glia (in triplicate) were generated by high-throughput sequencing in an Illumina GAIIx	Danio rerio	Eye	Injury		Injury	0, 16, 8	Link
SLEEP DISRUPTION AND AGING FOREBRAIN SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Brain	Sleep-Deprived	GSE240693	Sleep	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING FOREBRAIN WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Brain	Wild-Type	GSE240693	Control	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING IN CEREBELLUM SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Brain	Sleep-Deprived	GSE240693	Sleep	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING IN CEREBELLUM WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Brain	Wild-Type	GSE240693	Control	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING IN KIDNEY SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Kidney	Sleep-Deprived	GSE240693	Sleep	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING IN KIDNEY WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Kidney	Wild-Type	GSE240693	Control	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING IN LIVER SLEEP-DEPRIVED: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Liver	Sleep-Deprived	GSE240693	Sleep	12, 20, 16, 0, 4, 8	Link
SLEEP DISRUPTION AND AGING IN LIVER WT: Property of circadian-affected tissue-specific genes in cerebellum, forebrain, liver, kidney, and their link to aging and longevity.	Mus musculus	Liver	Wild-Type	GSE240693	Control	12, 20, 16, 0, 4, 8	Link
TEMPERATURE CHANGE AND CIRC RHYTHM 18C: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	18c	GSE241002	Temperature	114, 88, 110, 112, 82, 80, 86, 84, 24, 26, 20, 22, 28, 0, 2, 4, 6, 8, 78, 98, 108, 102, 90, 100, 92, 106, 94, 104, 96, 10, 12, 14, 16, 32, 30, 36, 34	Link
TEMPERATURE CHANGE AND CIRC RHYTHM 18C,HIGH-CALORIE: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	18c,high-Calorie	GSE241003	Diet, Temperature	24, 10, 12, 20, 14, 22, 16, 18, 2, 4, 6, 8	Link
TEMPERATURE CHANGE AND CIRC RHYTHM 18C,LOW-CALORIE: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	18c,low-Calorie	GSE241003	Diet, Temperature	24, 10, 12, 20, 14, 22, 16, 18, 2, 4, 6, 8	Link
TEMPERATURE CHANGE AND CIRC RHYTHM 25C: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	25c	GSE241002	Temperature	114, 88, 110, 112, 82, 80, 86, 84, 24, 26, 20, 22, 28, 0, 2, 4, 6, 8, 78, 98, 108, 102, 90, 100, 92, 106, 94, 104, 96, 10, 12, 14, 16, 32, 30, 36, 34	Link
TEMPERATURE CHANGE AND CIRC RHYTHM 25C,HIGH-CALORIE: mRNA expression level of the fat body from Drosophila melanogaster following a step change from 25C to 18C	Drosophila melanogaster	Fat Body	25c,high-Calorie	GSE241003	Diet, Temperature	24, 10, 12, 20, 14, 22, 16, 18, 2, 4, 6, 8	Link
TOVIN ZEBRAFISH 2012 KO: Adult (0.5-1.5 years old) transgenic zebrafish, Tg(aanat2:EGFP)Y8, which express enhanced green fluorescent protein (EGFP) in the pineal gland under the control of the aanat2 regulatory regions, were used. Fish were raised under 12-hr light:12-hr dark (LD) cycles, in a temperature controlled room, and transferred to constant darkness (DD) for tissue collection.	Danio rerio	Glands	KO		Knock-Out	10, 14, 22, 18, 2, 6	Link
VISION AND CIRCADIAN BIOLOGY CHOROIDAL MYOPIC: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Eye	Myopic	GSE261232	Disease	12, 20, 16, 0, 4, 8	Link
VISION AND CIRCADIAN BIOLOGY CHOROIDAL WT: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Eye	Wild-Type	GSE261232	Control	12, 20, 16, 0, 4, 8	Link
VISION AND CIRCADIAN BIOLOGY RETINAL MYOPIC: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Eye	Myopic	GSE261232	Disease	12, 20, 16, 0, 4, 8	Link
VISION AND CIRCADIAN BIOLOGY RETINAL WT: Examining the role of circadian biology in myopia by analyzing gene expression in the retina and choroid of chicks, comparing the myopic (occluded) eye to the contralateral control (open) eye	Gallus gallus	Eye	Wild-Type	GSE261232	Control	12, 20, 16, 0, 4, 8	Link

Dataset Description	Species	Tissue Class	Condition	GEO Accession	Experiment Type	Timepoints	Link
HUMAN U2 OS KRISHNAIAH 2017 OSTEOSARCOMA: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Homo sapiens	Cells	Osteosarcoma		Control	42, 24, 26, 20, 22, 46, 44, 48, 28, 40, 0, 2, 4, 6, 8, 38, 10, 12, 14, 16, 18, 30, 36, 34, 32	Link
MOUSE BRAIN LIVER MUSCLE RE PETRUS BRAIN RE:	Mus musculus	Brain	Re		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE BRAIN LIVER MUSCLE RE PETRUS KO:	Mus musculus	Liver	KO		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE BRAIN LIVER MUSCLE RE PETRUS LIVER RE:	Mus musculus	Liver	Re		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE BRAIN LIVER MUSCLE RE PETRUS MUSCLE RE:	Mus musculus	Muscle	Re		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE BRAIN LIVER MUSCLE RE PETRUS WT:	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE BROWN ADIPOSE DYAR 2018 HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Adipose	High-Fat		Control	24, 12, 20, 16, 0, 4, 8	Link
MOUSE BROWN ADIPOSE DYAR 2018 NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Adipose	Normal-Chow		Control	24, 12, 20, 16, 0, 4, 8	Link
MOUSE EXERCISE METABOLOME EVENING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening-Exercise		Control	24, 12, 20, 16, 4, 8	Link
MOUSE EXERCISE METABOLOME EVENING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening-Sedentary		Control	24, 12, 20, 16, 4, 8	Link
MOUSE EXERCISE METABOLOME MORNING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning-Exercise		Control	24, 12, 20, 16, 4, 8	Link
MOUSE EXERCISE METABOLOME MORNING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning-Sedentary		Control	24, 12, 20, 16, 4, 8	Link
MOUSE HEPATIC EVENING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening-Exercise		Exercise	12, 20, 16, 0, 4, 8	Link
MOUSE HEPATIC EVENING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Evening-Sedentary		Exercise	12, 20, 16, 0, 4, 8	Link
MOUSE HEPATIC MORNING-EXERCISE: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning-Exercise		Exercise	12, 20, 16, 0, 4, 8	Link
MOUSE HEPATIC MORNING-SEDENTARY: Metabolomic data for mouse exercise	Mus musculus	Liver	Morning-Sedentary		Exercise	12, 20, 16, 0, 4, 8	Link
MOUSE HEPATOCYTE KRISHNAIAH 2017 WT: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Wild-Type		Control	24, 12, 20, 16, 0, 4, 8	Link
MOUSE LIVER ECKEL-MAHAN 2011 CLOCK-KO: Liver metabolome of a Clock-KO experiment	Mus musculus	Liver	Clock-KO		Knock-Out	9, 3, 15, 21	Link
MOUSE LIVER ECKEL-MAHAN 2011 WT: Liver metabolome of a Clock-KO experiment	Mus musculus	Liver	Wild-Type		Control	9, 3, 15, 21	Link
MOUSE LIVER KRISHNAIAH 2017 BMAL1-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Bmal1-Kd		Knock-Out	42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE LIVER KRISHNAIAH 2017 CRY1-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Cry1-Kd		Knock-Out	42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE LIVER KRISHNAIAH 2017 CRY2-KD: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Cry2-Kd		Knock-Out	42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE LIVER KRISHNAIAH 2017 WT: High temporal resolution metabolite profiling to explore clock regulation of mouse liver and cell-autonomous metabolism.	Mus musculus	Liver	Wild-Type		Control	42, 43, 24, 25, 26, 27, 20, 21, 22, 23, 46, 47, 44, 45, 28, 29, 40, 41, 1, 0, 3, 2, 5, 4, 7, 6, 9, 8, 39, 38, 11, 10, 13, 12, 15, 14, 17, 16, 19, 18, 31, 30, 37, 36, 35, 34, 33, 32	Link
MOUSE LIVER METABOLOME ECKEL-MAHAN 2013 HIGH-FAT: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	High-Fat	GSE52333	Diet	24, 12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME ECKEL-MAHAN 2013 NORMAL-CHOW: Investigating widespread remodeling of the liver clock generated by high-fat diet.	Mus musculus	Liver	Normal-Chow	GSE52333	Control	24, 12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME MASRI 2014 SIRT1-KO: Liver metabolome of a Sirt1 KO experiment.	Mus musculus	Liver	Sirt1-KO	GSE57830	Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME MASRI 2014 SIRT1-WT: Liver metabolome of a Sirt1 KO experiment.	Mus musculus	Liver	Sirt1-Wild-Type	GSE57830	Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME MASRI 2014 SIRT6-KO: Metabolome of a liver in a Sirt6 KO experiment	Mus musculus	Liver	Sirt6-KO	GSE57830	Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME MASRI 2014 SIRT6-WT: Metabolome of a liver in a Sirt6 KO experiment	Mus musculus	Liver	Sirt6-Wild-Type	GSE57830	Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME MASRI 2016 LUNG-WT: Liver metabolome of a mouse with a distal tumor bearing lung as an experimental condition	Mus musculus	Liver	Lung-Wild-Type	GSE73222	Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER METABOLOME MASRI 2016 TUMOR-BEARING-LUNG: Liver metabolome of a mouse with a distal tumor bearing lung as an experimental condition	Mus musculus	Liver	Tumor-Bearing-Lung	GSE73222	Cancer	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER SASSONE METABOLOME KO: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	KO		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER SASSONE METABOLOME RE: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Re		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER SASSONE METABOLOME WT: Liver RNASeq with KO of all clock genes, and RE of just Liver Clock	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE MUSCLE DYAR 2018 HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and seru.	Mus musculus	Muscle	High-Fat		Control	12, 20, 16, 0, 4, 8	Link
MOUSE MUSCLE DYAR 2018 NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and seru.	Mus musculus	Muscle	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE MUSCLE NA 2018 KO: Mouse with Knock-Out condition	Mus musculus	Muscle	KO		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE MUSCLE NA 2018 WT: Mouse with Knock-Out condition	Mus musculus	Muscle	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE NF RE PETRUS KO:	Mus musculus	Liver	KO		Knock-Out	12, 20, 16, 0, 4, 8	Link
MOUSE NF RE PETRUS WT:	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE PREFRONTAL CORTEX NA 2018 HIGH-FAT:	Mus musculus	Brain	High-Fat		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE PREFRONTAL CORTEX NA 2018 NORMAL-CHOW:	Mus musculus	Brain	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE SERUM ABBONDANTE 2016 HIGH-FAT: Comparative circadian metabolomic analysis on serum and liver in mice under high fat diet.	Mus musculus	Blood	High-Fat		Diet	24, 12, 20, 16, 0, 4, 8	Link
MOUSE SERUM ABBONDANTE 2016 WT: Comparative circadian metabolomic analysis on serum and liver in mice under high fat diet.	Mus musculus	Blood	Wild-Type		Control	24, 12, 20, 16, 0, 4, 8	Link
MOUSE SPERM DYAR 2018 HIGH-FAT: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Reproductive	High-Fat		Control	12, 20, 16, 0, 4, 8	Link
MOUSE SPERM DYAR 2018 NORMAL-CHOW: Comprehensive in vivo temporal atlas of circadian metabolism across a variety of tissues and serum.	Mus musculus	Reproductive	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 HIGH-FAT:	Mus musculus	Brain	High-Fat		Diet	12, 20, 16, 0, 4, 8	Link
MOUSE SUPRACHIASMATIC NUCLEUS NA 2018 NORMAL-CHOW:	Mus musculus	Brain	Normal-Chow		Control	12, 20, 16, 0, 4, 8	Link
MOUSE WHITE ADIPOSE DYAR 2018 HIGH-FAT:	Mus musculus	Adipose	High-Fat		Control	24, 12, 20, 16, 0, 4, 8	Link
MOUSE WHITE ADIPOSE DYAR 2018 NORMAL-CHOW:	Mus musculus	Adipose	Normal-Chow		Control	24, 12, 20, 16, 0, 4, 8	Link

Dataset Description	Species	Tissue Class	Condition	Experiment Type	Timepoints	Link
MOUSE LIVER MASRI 2013 CLOCK-KO: Liver acetylome in a high fat diet experiment	Mus musculus	Liver	Clock-KO	Knock-Out	9, 3, 15, 21	Link
MOUSE LIVER MASRI 2013 WT: Liver acetylome in a high fat diet experiment	Mus musculus	Liver	Wild-Type	Control	9, 3, 15, 21	Link
MOUSE LIVER MAUVOISIN 2017 BMAL-KO: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Bmal-KO	Knock-Out	0, 12, 18, 6	Link
MOUSE LIVER MAUVOISIN 2017 BMAL-KO-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Bmal-KO-Nuclear	Knock-Out	0, 12, 18, 6	Link
MOUSE LIVER MAUVOISIN 2017 CRY-KO: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Cry-KO	Knock-Out	0, 12, 18, 6	Link
MOUSE LIVER MAUVOISIN 2017 CRY-KO-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Cry-KO-Nuclear	Knock-Out	0, 12, 18, 6	Link
MOUSE LIVER MAUVOISIN 2017 WT: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Wild-Type	Control	0, 12, 18, 6	Link
MOUSE LIVER MAUVOISIN 2017 WT-NUCLEAR: Comprehensive and rhythmic acetylome map of the mouse liver for total and nuclear proteins.	Mus musculus	Liver	Wild-Type-Nuclear	Control	0, 12, 18, 6	Link

Dataset Description	Species	Tissue Class	Condition	GEO Accession	Experiment Type	Timepoints	Link
HUMAN PLASMA DEPNER 2018 MISALIGNED: 24 hour plasma proteome profiles from human subjects under normal vs misaligned (simulated night shift) sleep/feeding schedules. Demonstrates that circadian misalignment (nighttime eating and daytime sleeping) rapidly disrupts normal 24h protein rhythms altering levels and timing of ~127 plasma proteins linked to metabolic and immune pathways.	Homo sapiens	Blood	Misaligned		Control	11, 13, 15, 21, 17, 23, 19, 22, 1, 3, 5, 7, 9	Link
MOUSE CARTILAGE DUDEK 2021 WT: Mouse hip articular cartilage collected every 4h over 48h for proteomic time-series analysis, identifying ~145 proteins with circadian oscillations in abundance (revealing robust daily rhythmicity in cartilage physiology).	Mus musculus	Cartilage	Wild-Type	PXD019431	Control	10, 26, 38, 14, 22, 46, 18, 30, 42, 34, 2, 6	Link
MOUSE CEREBRAL CORTEX GERSTNER 2016 WT: Comprehensive analysis of the effects of sleep deprivation and subsequent recovery sleep on gene expression in the mouse cortex.	Mus musculus	Brain	Wild-Type	GSE78215	Control	11, 0, 8, 7, 6	Link
MOUSE LIVER MAUVOISIN 2014 KO: Circadian liver proteome profiling (in vivo SILAC) in wild-type vs Cry1/Cry2 double-knockout mice under rhythmic feeding. Identifies hundreds of oscillating hepatic proteins and shows that many protein rhythms persist even without a functional clock (driven by feeding cues).	Mus musculus	Liver	KO	PXD001211	Knock-Out		Link
MOUSE LIVER MAUVOISIN 2014 WT: Circadian liver proteome profiling (in vivo SILAC) in wild-type vs Cry1/Cry2 double-knockout mice under rhythmic feeding. Identifies hundreds of oscillating hepatic proteins and shows that many protein rhythms persist even without a functional clock (driven by feeding cues).	Mus musculus	Liver	Wild-Type	PXD001211	Control		Link
MOUSE LIVER NA 2018 WT: Proteome of mouse liver.	Mus musculus	Liver	Wild-Type		Control	12, 20, 16, 0, 4, 8	Link
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME WANG 2017 BMALKO: Time-series nuclear phosphoproteomics of mouse liver (phosphopeptide enrichment every 3h for 45h) in wild-type vs Cry1/2 and Bmal1 knockout mice, providing insight into how circadian clock disruption affects rhythmic protein phosphorylation and function in the liver nucleus.	Mus musculus	Liver	Bmalko	PXD004191	Knock-Out	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME WANG 2017 BMALWT: Time-series nuclear phosphoproteomics of mouse liver (phosphopeptide enrichment every 3h for 45h) in wild-type vs Cry1/2 and Bmal1 knockout mice, providing insight into how circadian clock disruption affects rhythmic protein phosphorylation and function in the liver nucleus.	Mus musculus	Liver	Bmalwild-Type	PXD004191	Knock-Out	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME WANG 2017 CRYKO: Time-series nuclear phosphoproteomics of mouse liver (phosphopeptide enrichment every 3h for 45h) in wild-type vs Cry1/2 and Bmal1 knockout mice, providing insight into how circadian clock disruption affects rhythmic protein phosphorylation and function in the liver nucleus.	Mus musculus	Liver	Cryko	PXD004191	Knock-Out	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PHOSPHOPROTEOME WANG 2017 WT: Time-series nuclear phosphoproteomics of mouse liver (phosphopeptide enrichment every 3h for 45h) in wild-type vs Cry1/2 and Bmal1 knockout mice, providing insight into how circadian clock disruption affects rhythmic protein phosphorylation and function in the liver nucleus.	Mus musculus	Liver	Wild-Type	PXD004191	Control	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PROTEOME WANG 2017 BMAL++: Time-series nuclear proteomics of mouse liver (total nuclear protein levels measured every 3h for 45h) in wild-type vs clock-deficient mice (Cry1/2 double knockout and Bmal1 knockout), uncovering diurnal regulation of nuclear protein accumulation by the circadian clock.	Mus musculus	Liver	Bmal++	PXD003818	Knock-Out	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PROTEOME WANG 2017 BMALKO: Time-series nuclear proteomics of mouse liver (total nuclear protein levels measured every 3h for 45h) in wild-type vs clock-deficient mice (Cry1/2 double knockout and Bmal1 knockout), uncovering diurnal regulation of nuclear protein accumulation by the circadian clock.	Mus musculus	Liver	Bmalko	PXD003818	Knock-Out	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PROTEOME WANG 2017 CRYKO: Time-series nuclear proteomics of mouse liver (total nuclear protein levels measured every 3h for 45h) in wild-type vs clock-deficient mice (Cry1/2 double knockout and Bmal1 knockout), uncovering diurnal regulation of nuclear protein accumulation by the circadian clock.	Mus musculus	Liver	Cryko	PXD003818	Knock-Out	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER NUCLEAR PROTEOME WANG 2017 WT: Time-series nuclear proteomics of mouse liver (total nuclear protein levels measured every 3h for 45h) in wild-type vs clock-deficient mice (Cry1/2 double knockout and Bmal1 knockout), uncovering diurnal regulation of nuclear protein accumulation by the circadian clock.	Mus musculus	Liver	Wild-Type	PXD003818	Control	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER ROBLES 2014 WT: Global circadian proteome of mouse liver: ~6 percent of liver proteins exhibit 24h oscillations, often with phases differing from their mRNA rhythms highlighting post transcriptional mechanisms in circadian regulation of liver metabolism.	Mus musculus	Liver	Wild-Type	PXD000601	Control	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER ROBLES 2014 WT: Global circadian proteome of mouse liver: ~6 percent of liver proteins exhibit 24h oscillations, often with phases differing from their mRNA rhythms highlighting post transcriptional mechanisms in circadian regulation of liver metabolism.	Mus musculus	Liver	Wild-Type	PXD000601	Control	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE LIVER ROBLES 2014 WT: Global circadian proteome of mouse liver: ~6 percent of liver proteins exhibit 24h oscillations, often with phases differing from their mRNA rhythms highlighting post transcriptional mechanisms in circadian regulation of liver metabolism.	Mus musculus	Liver	Wild-Type	PXD000601	Control	24, 39, 12, 15, 21, 33, 18, 30, 42, 36, 0, 3, 27, 6, 9, 45	Link
MOUSE SUPRACHIASMATIC NUCLEUS MENDOZA 2017 MIR132-KO: SCN neurons from miR-132/212-deficient mice.	Mus musculus	Brain	Mir132-KO		Control	9, 3, 12, 21	Link
MOUSE SUPRACHIASMATIC NUCLEUS MENDOZA 2017 WT: SCN neurons from miR-132/212-deficient mice.	Mus musculus	Brain	Wild-Type		Control	9, 3, 12, 21	Link
MOUSE VENTRAL HIPPOCAMPUS PROTEOME KONRAD 2017 TEMPORAL-LOBE-EPILEPTIC:	Mus musculus	Brain	Temporal-Lobe-Epileptic		Disease	11, 15, 23, 19, 1, 3, 7	Link
MOUSE VENTRAL HIPPOCAMPUS PROTEOME KONRAD 2017 WT:	Mus musculus	Brain	Wild-Type		Control	11, 15, 23, 19, 1, 3, 7	Link

Datasets